PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55701-55750 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.5803 | 98.8156 | 96.3756 | 85.7277 | 584 | 7 | 585 | 22 | 1 | 4.5455 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.1176 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.4197 | 99.6124 | 99.2278 | 81.9638 | 257 | 1 | 257 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7075 | 99.0801 | 98.3378 | 83.1572 | 1831 | 17 | 1834 | 31 | 4 | 12.9032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | het | 98.4026 | 99.1729 | 97.6442 | 83.5954 | 1199 | 10 | 1202 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 95.5556 | 91.4894 | 100.0000 | 90.8898 | 43 | 4 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5773 | 99.4932 | 99.6616 | 80.9170 | 589 | 3 | 589 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.7266 | 99.0601 | 98.3954 | 83.7702 | 1897 | 18 | 1901 | 31 | 4 | 12.9032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.4217 | 99.1242 | 97.7291 | 84.1426 | 1245 | 11 | 1248 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 91.1417 | 44 | 4 | 45 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 81.7529 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7423 | 99.0717 | 98.4151 | 83.8640 | 1921 | 18 | 1925 | 31 | 4 | 12.9032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | het | 98.4365 | 99.1325 | 97.7502 | 84.2651 | 1257 | 11 | 1260 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 95.9184 | 92.1569 | 100.0000 | 90.8046 | 47 | 4 | 48 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5964 | 99.5161 | 99.6769 | 81.8369 | 617 | 3 | 617 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.6181 | 98.9919 | 96.2818 | 88.4650 | 491 | 5 | 492 | 19 | 3 | 15.7895 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0197 | 98.8406 | 95.2646 | 88.9606 | 341 | 4 | 342 | 17 | 1 | 5.8824 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8102 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9899 | 99.3243 | 98.6577 | 85.6868 | 147 | 1 | 147 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3151 | 99.0809 | 97.5610 | 86.3283 | 1078 | 10 | 1080 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8277 | 99.0358 | 96.6488 | 86.8244 | 719 | 7 | 721 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.9044 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4269 | 99.4269 | 99.4269 | 83.7068 | 347 | 2 | 347 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3954 | 99.1251 | 97.6764 | 86.9350 | 1133 | 10 | 1135 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9343 | 99.0838 | 96.8112 | 87.3344 | 757 | 7 | 759 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.8457 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4505 | 99.4505 | 99.4505 | 84.6219 | 362 | 2 | 362 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4147 | 99.1357 | 97.7041 | 87.0012 | 1147 | 10 | 1149 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9502 | 99.0909 | 96.8354 | 87.4264 | 763 | 7 | 765 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.9420 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4624 | 99.4624 | 99.4624 | 84.6217 | 370 | 2 | 370 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4608 | 99.3080 | 95.6811 | 91.3754 | 287 | 2 | 288 | 13 | 1 | 7.6923 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | het | 96.6323 | 99.0099 | 94.3662 | 91.7951 | 200 | 2 | 201 | 12 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1308 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 89.0724 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9354 | 99.0237 | 96.8707 | 88.7477 | 710 | 7 | 712 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3614 | 99.1701 | 95.6175 | 89.2020 | 478 | 4 | 480 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4249 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 86.2424 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0583 | 99.0826 | 97.0551 | 89.2528 | 756 | 7 | 758 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5224 | 99.2218 | 95.8801 | 89.6170 | 510 | 4 | 512 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7186 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3789 | 99.1736 | 99.5851 | 87.0500 | 240 | 2 | 240 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.9683 | 98.9717 | 96.9849 | 89.2621 | 770 | 8 | 772 | 24 | 4 | 16.6667 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4630 | 99.0421 | 95.9335 | 89.6756 | 517 | 5 | 519 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.4074 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 86.9679 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m0_e0 | * | 92.9293 | 100.0000 | 86.7925 | 97.1973 | 46 | 0 | 46 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m0_e0 | het | 90.4110 | 100.0000 | 82.5000 | 97.1711 | 33 | 0 | 33 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||