PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55501-55550 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.9699 | 15 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.7631 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.5923 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 95.9664 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4194 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.1003 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | * | * | 99.4998 | 99.2726 | 99.7280 | 57.5644 | 149568 | 1096 | 149613 | 408 | 306 | 75.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | * | het | 99.6023 | 99.4952 | 99.7096 | 59.9116 | 78642 | 399 | 78624 | 229 | 130 | 56.7686 | |
| hfeng-pmm2 | INDEL | I1_5 | * | hetalt | 97.2753 | 94.7119 | 99.9812 | 62.6532 | 10603 | 592 | 10662 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | * | homalt | 99.7668 | 99.8262 | 99.7075 | 52.8322 | 60323 | 105 | 60327 | 177 | 174 | 98.3051 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002complexvar | * | 99.5522 | 99.2597 | 99.8464 | 56.6743 | 33116 | 247 | 33159 | 51 | 38 | 74.5098 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002complexvar | het | 99.4756 | 99.0819 | 99.8724 | 57.6818 | 18022 | 167 | 18002 | 23 | 11 | 47.8261 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0250 | 96.2341 | 99.8839 | 71.1509 | 1661 | 65 | 1720 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002complexvar | homalt | 99.8477 | 99.8885 | 99.8069 | 52.0702 | 13433 | 15 | 13437 | 26 | 25 | 96.1538 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | * | 96.1838 | 94.3347 | 98.1069 | 65.2150 | 11656 | 700 | 11660 | 225 | 222 | 98.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | het | 89.4149 | 87.4118 | 91.5119 | 86.7066 | 743 | 107 | 690 | 64 | 62 | 96.8750 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | hetalt | 97.2799 | 94.7124 | 99.9906 | 57.4359 | 10586 | 591 | 10643 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | homalt | 80.1471 | 99.3921 | 67.1458 | 86.0378 | 327 | 2 | 327 | 160 | 159 | 99.3750 | |
| hfeng-pmm2 | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I1_5 | func_cds | * | 99.4460 | 99.4444 | 99.4475 | 34.6570 | 179 | 1 | 180 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | func_cds | het | 98.3192 | 98.3051 | 98.3333 | 42.3077 | 58 | 1 | 59 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.0000 | 119 | 0 | 119 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8776 | 89.9023 | 98.2206 | 65.9944 | 1656 | 186 | 1656 | 30 | 21 | 70.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4633 | 93.6556 | 97.3422 | 77.2830 | 620 | 42 | 586 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.6667 | 84.6154 | 100.0000 | 42.4110 | 759 | 138 | 793 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5157 | 97.8799 | 95.1890 | 68.7433 | 277 | 6 | 277 | 14 | 14 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8569 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.7125 | 97.6953 | 99.7510 | 72.1894 | 15218 | 359 | 15225 | 38 | 29 | 76.3158 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1836 | 98.6234 | 99.7502 | 77.6187 | 6018 | 84 | 5989 | 15 | 7 | 46.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7089 | 95.5204 | 100.0000 | 63.1123 | 5672 | 266 | 5708 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5485 | 99.7455 | 99.3523 | 71.7771 | 3528 | 9 | 3528 | 23 | 22 | 95.6522 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1193 | 96.7034 | 99.5773 | 66.6375 | 15547 | 530 | 15547 | 66 | 50 | 75.7576 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4720 | 97.5389 | 99.4231 | 74.9870 | 6262 | 158 | 6204 | 36 | 21 | 58.3333 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9771 | 94.1316 | 100.0000 | 39.8864 | 5550 | 346 | 5608 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2559 | 99.3087 | 99.2032 | 69.9329 | 3735 | 26 | 3735 | 30 | 29 | 96.6667 | |