PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54551-54600 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.9278 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 82.3529 | 73.6842 | 93.3333 | 99.4485 | 42 | 15 | 42 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 76.0563 | 64.2857 | 93.1034 | 99.3908 | 27 | 15 | 27 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2126 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.6897 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8226 | 97.8845 | 99.7788 | 48.7459 | 3609 | 78 | 3609 | 8 | 6 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1292 | 96.6767 | 99.6259 | 57.5998 | 1600 | 55 | 1598 | 6 | 4 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1037 | 98.2234 | 100.0000 | 28.2542 | 1161 | 21 | 1163 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7647 | 99.7647 | 99.7647 | 48.5783 | 848 | 2 | 848 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8631 | 95.1331 | 98.6572 | 48.4108 | 1251 | 64 | 1249 | 17 | 12 | 70.5882 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7156 | 93.6364 | 95.8199 | 71.7786 | 309 | 21 | 298 | 13 | 9 | 69.2308 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2176 | 94.7037 | 99.8686 | 24.8766 | 751 | 42 | 760 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9637 | 99.4792 | 98.4536 | 42.7729 | 191 | 1 | 191 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3024 | 98.7283 | 99.8831 | 33.4500 | 1708 | 22 | 1709 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.9247 | 98.1508 | 99.7110 | 42.4771 | 690 | 13 | 690 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2235 | 98.4589 | 100.0000 | 19.2146 | 575 | 9 | 576 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 32.3664 | 443 | 0 | 443 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.7509 | 94.3662 | 99.2593 | 43.0380 | 134 | 8 | 134 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.3043 | 87.5000 | 95.4545 | 74.4186 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.3545 | 94.8454 | 100.0000 | 23.3333 | 92 | 5 | 92 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 32.2581 | 21 | 0 | 21 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | * | 96.6184 | 97.0874 | 96.1538 | 88.7931 | 100 | 3 | 100 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 89.9200 | 59 | 1 | 59 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 81.8182 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.7255 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | * | 96.4567 | 94.9612 | 98.0000 | 85.8277 | 245 | 13 | 245 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2549 | 98.4127 | 96.1240 | 88.6544 | 124 | 2 | 124 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 73.9130 | 60 | 8 | 60 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6000 | 95.3125 | 100.0000 | 84.6348 | 61 | 3 | 61 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | * | 96.3391 | 94.6970 | 98.0392 | 86.4506 | 250 | 14 | 250 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 89.0445 | 128 | 3 | 128 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 75.5102 | 60 | 8 | 60 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6378 | 95.3846 | 100.0000 | 85.3428 | 62 | 3 | 62 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | * | 96.2963 | 94.5455 | 98.1132 | 86.2694 | 260 | 15 | 260 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 88.9159 | 132 | 3 | 132 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 75.2896 | 64 | 9 | 64 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7099 | 95.5224 | 100.0000 | 85.2874 | 64 | 3 | 64 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 92.9556 | 46 | 1 | 46 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 93.8053 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.7241 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.8166 | 95.7265 | 100.0000 | 90.2012 | 112 | 5 | 112 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | het | 98.4127 | 96.8750 | 100.0000 | 91.8954 | 62 | 2 | 62 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 85.3448 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 87.4046 | 33 | 1 | 33 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 90.4610 | 120 | 6 | 120 | 0 | 0 | ||