PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54451-54500 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.5660 | 94.2153 | 99.0370 | 52.3174 | 3290 | 202 | 3291 | 32 | 26 | 81.2500 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.9533 | 95.6873 | 98.2533 | 72.2760 | 710 | 32 | 675 | 12 | 7 | 58.3333 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.5801 | 93.4226 | 99.9585 | 35.8626 | 2372 | 167 | 2408 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.9772 | 98.5782 | 91.6300 | 69.1156 | 208 | 3 | 208 | 19 | 18 | 94.7368 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.1586 | 95.2030 | 99.1964 | 50.6041 | 2838 | 143 | 2839 | 23 | 18 | 78.2609 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.3714 | 96.1857 | 98.5866 | 71.6148 | 580 | 23 | 558 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1847 | 94.5662 | 99.9523 | 34.2023 | 2071 | 119 | 2094 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.1440 | 99.4681 | 93.0348 | 67.3701 | 187 | 1 | 187 | 14 | 13 | 92.8571 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6488 | 94.3546 | 99.0574 | 55.6339 | 3677 | 220 | 3678 | 35 | 28 | 80.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | * | het | 98.1073 | 97.3775 | 98.8481 | 59.1502 | 11288 | 304 | 11242 | 131 | 113 | 86.2595 | |
| hfeng-pmm2 | INDEL | D6_15 | * | hetalt | 96.9508 | 94.1277 | 99.9483 | 34.1160 | 7694 | 480 | 7740 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | * | homalt | 99.3853 | 99.6838 | 99.0886 | 51.6854 | 6306 | 20 | 6306 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002complexvar | * | 96.9573 | 94.6624 | 99.3663 | 56.8597 | 5019 | 283 | 5018 | 32 | 26 | 81.2500 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002complexvar | het | 95.8142 | 92.5641 | 99.3009 | 57.1386 | 2888 | 232 | 2841 | 20 | 16 | 80.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002complexvar | hetalt | 97.4274 | 95.1629 | 99.8024 | 48.6555 | 964 | 49 | 1010 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002complexvar | homalt | 99.4885 | 99.8289 | 99.1504 | 61.5359 | 1167 | 2 | 1167 | 10 | 9 | 90.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | * | 95.3103 | 92.7251 | 98.0438 | 33.3983 | 8374 | 657 | 8370 | 167 | 162 | 97.0060 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | het | 82.2726 | 79.2056 | 85.5867 | 66.5243 | 678 | 178 | 671 | 113 | 110 | 97.3451 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.9666 | 94.1234 | 99.9870 | 24.8188 | 7672 | 479 | 7675 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | homalt | 47.5248 | 100.0000 | 31.1688 | 71.0526 | 24 | 0 | 24 | 53 | 52 | 98.1132 | |
| hfeng-pmm2 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9024 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1379 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 53.7634 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.2754 | 89.6920 | 97.1571 | 51.8026 | 3524 | 405 | 3520 | 103 | 96 | 93.2039 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.2944 | 90.1145 | 92.5056 | 71.8602 | 866 | 95 | 827 | 67 | 61 | 91.0448 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.2379 | 87.4049 | 99.9050 | 31.0740 | 2068 | 298 | 2103 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.2480 | 98.0066 | 94.5513 | 51.4774 | 590 | 12 | 590 | 34 | 33 | 97.0588 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.2727 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0378 | 96.8281 | 99.2780 | 56.6258 | 15538 | 509 | 15539 | 113 | 101 | 89.3805 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.1165 | 95.7477 | 98.5251 | 68.8562 | 5359 | 238 | 5344 | 80 | 71 | 88.7500 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.0017 | 96.1098 | 99.9695 | 34.1855 | 6547 | 265 | 6563 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4932 | 99.8351 | 99.1537 | 57.8723 | 3632 | 6 | 3632 | 31 | 29 | 93.5484 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2283 | 95.5860 | 98.9279 | 54.0066 | 16891 | 780 | 16887 | 183 | 169 | 92.3497 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.4691 | 95.1249 | 97.8519 | 68.0089 | 5561 | 285 | 5512 | 121 | 112 | 92.5620 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9125 | 94.0563 | 99.9476 | 30.4494 | 7580 | 479 | 7625 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.5323 | 89.9522 | 97.4093 | 74.9025 | 188 | 21 | 188 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.2449 | 88.9764 | 95.7627 | 76.5408 | 113 | 14 | 113 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1408 | 82.0513 | 100.0000 | 60.9756 | 32 | 7 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 76.6304 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 4 | 0 | 4 | 0 | 0 | ||