PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
54051-54100 / 86044 show all | |||||||||||||||
hfeng-pmm2 | SNP | * | map_l100_m0_e0 | * | 99.2701 | 99.4001 | 99.1404 | 70.5461 | 32644 | 197 | 32640 | 283 | 34 | 12.0141 | |
hfeng-pmm2 | SNP | * | map_l100_m0_e0 | het | 99.0069 | 99.2124 | 98.8022 | 73.2241 | 21038 | 167 | 21034 | 255 | 23 | 9.0196 | |
hfeng-pmm2 | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l100_m0_e0 | homalt | 99.7504 | 99.7418 | 99.7590 | 63.9103 | 11590 | 30 | 11590 | 28 | 11 | 39.2857 | |
hfeng-pmm2 | SNP | * | map_l100_m1_e0 | * | 99.5195 | 99.5580 | 99.4810 | 66.0017 | 72083 | 320 | 72072 | 376 | 47 | 12.5000 | |
hfeng-pmm2 | SNP | * | map_l100_m1_e0 | het | 99.3136 | 99.3717 | 99.2555 | 68.4046 | 45074 | 285 | 45063 | 338 | 28 | 8.2840 | |
hfeng-pmm2 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l100_m1_e0 | homalt | 99.8648 | 99.8704 | 99.8593 | 60.9853 | 26968 | 35 | 26968 | 38 | 19 | 50.0000 | |
hfeng-pmm2 | SNP | * | map_l100_m2_e0 | * | 99.5209 | 99.5633 | 99.4785 | 67.6209 | 73641 | 323 | 73630 | 386 | 47 | 12.1762 | |
hfeng-pmm2 | SNP | * | map_l100_m2_e0 | het | 99.3150 | 99.3793 | 99.2508 | 69.6789 | 46111 | 288 | 46100 | 348 | 28 | 8.0460 | |
hfeng-pmm2 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.8945 | 42 | 0 | 42 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l100_m2_e0 | homalt | 99.8674 | 99.8728 | 99.8619 | 63.3992 | 27488 | 35 | 27488 | 38 | 19 | 50.0000 | |
hfeng-pmm2 | SNP | * | map_l100_m2_e1 | * | 99.5245 | 99.5678 | 99.4812 | 67.6245 | 74414 | 323 | 74403 | 388 | 47 | 12.1134 | |
hfeng-pmm2 | SNP | * | map_l100_m2_e1 | het | 99.3202 | 99.3859 | 99.2545 | 69.6861 | 46610 | 288 | 46599 | 350 | 28 | 8.0000 | |
hfeng-pmm2 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5000 | 43 | 0 | 43 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l100_m2_e1 | homalt | 99.8687 | 99.8741 | 99.8633 | 63.3911 | 27761 | 35 | 27761 | 38 | 19 | 50.0000 | |
hfeng-pmm2 | SNP | * | map_l125_m0_e0 | * | 99.0092 | 99.2468 | 98.7728 | 76.6565 | 19239 | 146 | 19236 | 239 | 30 | 12.5523 | |
hfeng-pmm2 | SNP | * | map_l125_m0_e0 | het | 98.6818 | 99.0287 | 98.3373 | 78.8543 | 12541 | 123 | 12538 | 212 | 20 | 9.4340 | |
hfeng-pmm2 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l125_m0_e0 | homalt | 99.6276 | 99.6573 | 99.5980 | 70.8911 | 6689 | 23 | 6689 | 27 | 10 | 37.0370 | |
hfeng-pmm2 | SNP | * | map_l125_m1_e0 | * | 99.3629 | 99.4529 | 99.2732 | 71.9477 | 45079 | 248 | 45073 | 330 | 39 | 11.8182 | |
hfeng-pmm2 | SNP | * | map_l125_m1_e0 | het | 99.0978 | 99.2392 | 98.9567 | 74.3753 | 28176 | 216 | 28170 | 297 | 25 | 8.4175 | |
hfeng-pmm2 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 30 | 0 | 30 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l125_m1_e0 | homalt | 99.8078 | 99.8107 | 99.8048 | 66.6048 | 16873 | 32 | 16873 | 33 | 14 | 42.4242 | |
hfeng-pmm2 | SNP | * | map_l125_m2_e0 | * | 99.3766 | 99.4649 | 99.2885 | 73.4867 | 46473 | 250 | 46467 | 333 | 39 | 11.7117 | |
hfeng-pmm2 | SNP | * | map_l125_m2_e0 | het | 99.1177 | 99.2564 | 98.9794 | 75.5476 | 29100 | 218 | 29094 | 300 | 25 | 8.3333 | |
hfeng-pmm2 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l125_m2_e0 | homalt | 99.8130 | 99.8158 | 99.8101 | 69.0538 | 17343 | 32 | 17343 | 33 | 14 | 42.4242 | |
hfeng-pmm2 | SNP | * | map_l125_m2_e1 | * | 99.3819 | 99.4704 | 99.2936 | 73.5231 | 46952 | 250 | 46946 | 334 | 39 | 11.6766 | |
hfeng-pmm2 | SNP | * | map_l125_m2_e1 | het | 99.1256 | 99.2645 | 98.9871 | 75.5812 | 29422 | 218 | 29416 | 301 | 25 | 8.3057 | |
hfeng-pmm2 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l125_m2_e1 | homalt | 99.8146 | 99.8175 | 99.8118 | 69.0869 | 17500 | 32 | 17500 | 33 | 14 | 42.4242 | |
hfeng-pmm2 | SNP | * | map_l150_m0_e0 | * | 98.8358 | 99.1523 | 98.5214 | 81.5215 | 11930 | 102 | 11927 | 179 | 19 | 10.6145 | |
hfeng-pmm2 | SNP | * | map_l150_m0_e0 | het | 98.4569 | 98.8665 | 98.0507 | 83.2717 | 7850 | 90 | 7847 | 156 | 11 | 7.0513 | |
hfeng-pmm2 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l150_m0_e0 | homalt | 99.5726 | 99.7065 | 99.4390 | 76.7349 | 4077 | 12 | 4077 | 23 | 8 | 34.7826 | |
hfeng-pmm2 | SNP | * | map_l150_m1_e0 | * | 99.2283 | 99.3662 | 99.0908 | 76.3631 | 30415 | 194 | 30409 | 279 | 34 | 12.1864 | |
hfeng-pmm2 | SNP | * | map_l150_m1_e0 | het | 98.9149 | 99.1251 | 98.7057 | 78.5477 | 19147 | 169 | 19141 | 251 | 23 | 9.1634 | |
hfeng-pmm2 | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l150_m1_e0 | homalt | 99.7650 | 99.7782 | 99.7517 | 71.3283 | 11248 | 25 | 11248 | 28 | 11 | 39.2857 | |
hfeng-pmm2 | SNP | * | map_l150_m2_e0 | * | 99.2475 | 99.3878 | 99.1076 | 77.7218 | 31657 | 195 | 31651 | 285 | 34 | 11.9298 | |
hfeng-pmm2 | SNP | * | map_l150_m2_e0 | het | 98.9416 | 99.1556 | 98.7286 | 79.5932 | 19963 | 170 | 19957 | 257 | 23 | 8.9494 | |
hfeng-pmm2 | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l150_m2_e0 | homalt | 99.7735 | 99.7863 | 99.7607 | 73.5081 | 11674 | 25 | 11674 | 28 | 11 | 39.2857 | |
hfeng-pmm2 | SNP | * | map_l150_m2_e1 | * | 99.2528 | 99.3946 | 99.1113 | 77.7651 | 32015 | 195 | 32009 | 287 | 34 | 11.8467 | |
hfeng-pmm2 | SNP | * | map_l150_m2_e1 | het | 98.9487 | 99.1652 | 98.7332 | 79.6403 | 20193 | 170 | 20187 | 259 | 23 | 8.8803 | |
hfeng-pmm2 | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
hfeng-pmm2 | SNP | * | map_l150_m2_e1 | homalt | 99.7760 | 99.7886 | 99.7633 | 73.5353 | 11802 | 25 | 11802 | 28 | 11 | 39.2857 | |
hfeng-pmm2 | SNP | * | map_l250_m0_e0 | * | 97.8575 | 98.4075 | 97.3136 | 93.5175 | 2101 | 34 | 2101 | 58 | 9 | 15.5172 | |
hfeng-pmm2 | SNP | * | map_l250_m0_e0 | het | 97.4257 | 98.0080 | 96.8504 | 93.8031 | 1476 | 30 | 1476 | 48 | 4 | 8.3333 |