PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53551-53600 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7184 | 99.7306 | 99.7062 | 74.0814 | 4072 | 11 | 4072 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | * | 99.1408 | 99.3306 | 98.9518 | 77.9286 | 11425 | 77 | 11423 | 121 | 14 | 11.5702 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | het | 98.8125 | 99.1018 | 98.5248 | 79.6036 | 7282 | 66 | 7280 | 109 | 10 | 9.1743 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7219 | 99.7339 | 99.7098 | 74.0785 | 4123 | 11 | 4123 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | * | 97.4026 | 98.0392 | 96.7742 | 93.4737 | 750 | 15 | 750 | 25 | 4 | 16.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | het | 97.0435 | 97.5524 | 96.5398 | 93.4041 | 558 | 14 | 558 | 20 | 1 | 5.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.6122 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | * | 98.2628 | 98.3000 | 98.2257 | 89.1399 | 2602 | 45 | 2602 | 47 | 6 | 12.7660 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | het | 97.7031 | 97.5937 | 97.8127 | 89.8457 | 1744 | 43 | 1744 | 39 | 2 | 5.1282 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | homalt | 99.4179 | 99.7664 | 99.0719 | 87.2692 | 854 | 2 | 854 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | * | 98.3016 | 98.4039 | 98.1994 | 89.7037 | 2836 | 46 | 2836 | 52 | 7 | 13.4615 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | het | 97.7583 | 97.7835 | 97.7331 | 90.3173 | 1897 | 43 | 1897 | 44 | 3 | 6.8182 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | homalt | 99.4146 | 99.6798 | 99.1507 | 88.1241 | 934 | 3 | 934 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | * | 98.3213 | 98.4225 | 98.2204 | 89.7650 | 2870 | 46 | 2870 | 52 | 7 | 13.4615 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | het | 97.7868 | 97.8117 | 97.7620 | 90.3675 | 1922 | 43 | 1922 | 44 | 3 | 6.8182 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | homalt | 99.4201 | 99.6829 | 99.1588 | 88.2127 | 943 | 3 | 943 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | map_siren | * | 99.6626 | 99.6995 | 99.6257 | 59.0414 | 45792 | 138 | 45784 | 172 | 23 | 13.3721 | |
| hfeng-pmm2 | SNP | tv | map_siren | het | 99.5196 | 99.5806 | 99.4588 | 60.5491 | 28489 | 120 | 28484 | 155 | 14 | 9.0323 | |
| hfeng-pmm2 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_siren | homalt | 99.9014 | 99.9014 | 99.9014 | 56.1199 | 17223 | 17 | 17220 | 17 | 9 | 52.9412 | |
| hfeng-pmm2 | SNP | tv | segdup | * | 99.6780 | 99.8125 | 99.5439 | 91.3819 | 8516 | 16 | 8512 | 39 | 4 | 10.2564 | |
| hfeng-pmm2 | SNP | tv | segdup | het | 99.5467 | 99.7541 | 99.3402 | 91.9297 | 5274 | 13 | 5270 | 35 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5862 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | segdup | homalt | 99.8919 | 99.9074 | 99.8765 | 90.2428 | 3235 | 3 | 3235 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 50.0000 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 42.8571 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 95.9770 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 94.8454 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | * | 99.3277 | 99.4212 | 99.2343 | 69.9178 | 21645 | 126 | 21642 | 167 | 19 | 11.3772 | |
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | het | 99.0752 | 99.2276 | 98.9232 | 72.7259 | 13875 | 108 | 13872 | 151 | 12 | 7.9470 | |
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5455 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | homalt | 99.7813 | 99.7685 | 99.7941 | 63.0398 | 7756 | 18 | 7756 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | * | 99.5399 | 99.5410 | 99.5389 | 65.3094 | 47711 | 220 | 47704 | 221 | 30 | 13.5747 | |
| hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | het | 99.3403 | 99.3387 | 99.3419 | 67.8029 | 29744 | 198 | 29737 | 197 | 16 | 8.1218 | |
| hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.8739 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | homalt | 99.8719 | 99.8775 | 99.8664 | 60.1447 | 17938 | 22 | 17938 | 24 | 14 | 58.3333 | |
| hfeng-pmm2 | SNP | ti | map_l100_m2_e0 | * | 99.5384 | 99.5445 | 99.5323 | 66.9341 | 48738 | 223 | 48731 | 229 | 30 | 13.1004 | |