PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53401-53450 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | * | 95.8065 | 97.3770 | 94.2857 | 95.7792 | 297 | 8 | 297 | 18 | 4 | 22.2222 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | het | 94.3590 | 96.8421 | 92.0000 | 96.2714 | 184 | 6 | 184 | 16 | 2 | 12.5000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2093 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 94.2144 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | * | 95.9881 | 97.5831 | 94.4444 | 96.0098 | 323 | 8 | 323 | 19 | 4 | 21.0526 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | het | 94.6636 | 97.1429 | 92.3077 | 96.3848 | 204 | 6 | 204 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7528 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 94.7513 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | * | 96.0118 | 97.5976 | 94.4767 | 96.0984 | 325 | 8 | 325 | 19 | 4 | 21.0526 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | het | 94.6882 | 97.1564 | 92.3423 | 96.4734 | 205 | 6 | 205 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2759 | 98.2759 | 98.2759 | 94.8444 | 114 | 2 | 114 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_siren | * | 98.8132 | 98.7719 | 98.8544 | 81.7102 | 7319 | 91 | 7335 | 85 | 17 | 20.0000 | |
| hfeng-pmm2 | INDEL | * | map_siren | het | 98.6272 | 98.7134 | 98.5411 | 82.4078 | 4450 | 58 | 4458 | 66 | 5 | 7.5758 | |
| hfeng-pmm2 | INDEL | * | map_siren | hetalt | 96.2185 | 92.7126 | 100.0000 | 87.6338 | 229 | 18 | 231 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_siren | homalt | 99.3610 | 99.4350 | 99.2871 | 79.4763 | 2640 | 15 | 2646 | 19 | 12 | 63.1579 | |
| hfeng-pmm2 | INDEL | * | segdup | * | 99.0994 | 98.9828 | 99.2163 | 94.4475 | 2530 | 26 | 2532 | 20 | 4 | 20.0000 | |
| hfeng-pmm2 | INDEL | * | segdup | het | 98.9768 | 98.9768 | 98.9768 | 94.9944 | 1451 | 15 | 1451 | 15 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | segdup | hetalt | 96.4143 | 93.0769 | 100.0000 | 94.8471 | 121 | 9 | 123 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | segdup | homalt | 99.6360 | 99.7917 | 99.4808 | 93.2596 | 958 | 2 | 958 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9959 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | tech_badpromoters | * | 97.9866 | 96.0526 | 100.0000 | 52.9032 | 73 | 3 | 73 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | tech_badpromoters | het | 96.0000 | 92.3077 | 100.0000 | 51.3514 | 36 | 3 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 54.7945 | 33 | 0 | 33 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||