PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53301-53350 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.5003 | 96.1325 | 98.9076 | 58.5444 | 41659 | 1676 | 41469 | 458 | 399 | 87.1179 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1966 | 96.0492 | 98.3718 | 68.1010 | 17115 | 704 | 16736 | 277 | 229 | 82.6715 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.7231 | 93.7001 | 99.9475 | 34.6971 | 13148 | 884 | 13337 | 7 | 6 | 85.7143 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8635 | 99.2337 | 98.4961 | 57.7259 | 11396 | 88 | 11396 | 174 | 164 | 94.2529 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8737 | 96.6718 | 99.1058 | 64.7457 | 63176 | 2175 | 62956 | 568 | 465 | 81.8662 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6456 | 96.4829 | 98.8367 | 71.2472 | 29408 | 1072 | 28971 | 341 | 255 | 74.7801 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9418 | 94.1095 | 99.9498 | 41.0630 | 15721 | 984 | 15938 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0722 | 99.3449 | 98.8011 | 64.3152 | 18047 | 119 | 18047 | 219 | 203 | 92.6941 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2164 | 97.1032 | 99.3555 | 50.5488 | 35532 | 1060 | 35455 | 230 | 205 | 89.1304 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7812 | 96.5482 | 99.0462 | 60.2645 | 15216 | 544 | 15057 | 145 | 123 | 84.8276 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6612 | 95.4654 | 99.9603 | 33.6622 | 10000 | 475 | 10082 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4122 | 99.6041 | 99.2209 | 44.4011 | 10316 | 41 | 10316 | 81 | 79 | 97.5309 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.4414 | 79.6287 | 92.1694 | 54.6077 | 1673 | 428 | 1589 | 135 | 130 | 96.2963 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.1831 | 83.0612 | 73.8462 | 79.1933 | 407 | 83 | 240 | 85 | 82 | 96.4706 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.2596 | 74.3610 | 99.9015 | 32.1524 | 931 | 321 | 1014 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.1750 | 93.3148 | 87.2396 | 48.1081 | 335 | 24 | 335 | 49 | 47 | 95.9184 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7892 | 99.6568 | 99.9219 | 57.6377 | 28163 | 97 | 28165 | 22 | 14 | 63.6364 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7347 | 99.5374 | 99.9328 | 57.9303 | 16353 | 76 | 16352 | 11 | 4 | 36.3636 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.7701 | 97.5701 | 100.0000 | 73.5650 | 522 | 13 | 525 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9292 | 99.9026 | 55.9613 | 11288 | 8 | 11288 | 11 | 10 | 90.9091 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.9320 | 77.4194 | 94.0594 | 99.9207 | 96 | 28 | 95 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.1011 | 67.8161 | 92.0635 | 99.9065 | 59 | 28 | 58 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8857 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9523 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1492 | 98.5802 | 99.7249 | 57.4159 | 19580 | 282 | 19573 | 54 | 32 | 59.2593 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9153 | 98.1365 | 99.7066 | 60.6969 | 10901 | 207 | 10875 | 32 | 10 | 31.2500 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7925 | 97.6137 | 100.0000 | 42.7983 | 2618 | 64 | 2637 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7285 | 99.8188 | 99.6383 | 55.6923 | 6061 | 11 | 6061 | 22 | 22 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6238 | 94.6516 | 98.6800 | 66.1797 | 2513 | 142 | 2467 | 33 | 25 | 75.7576 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9545 | 92.8719 | 97.1326 | 81.0032 | 899 | 69 | 813 | 24 | 17 | 70.8333 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1639 | 94.5607 | 99.9146 | 34.3978 | 1130 | 65 | 1170 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.3740 | 98.3740 | 98.3740 | 59.0341 | 484 | 8 | 484 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4783 | 99.1237 | 99.8355 | 46.7341 | 6674 | 59 | 6676 | 11 | 5 | 45.4545 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2444 | 98.7425 | 99.7514 | 50.7816 | 3612 | 46 | 3612 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3457 | 98.6999 | 100.0000 | 30.6231 | 911 | 12 | 913 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9303 | 99.9535 | 99.9071 | 44.5246 | 2151 | 1 | 2151 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.7052 | 92.7928 | 96.6981 | 61.0294 | 206 | 16 | 205 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.3181 | 84.0000 | 90.9091 | 83.8235 | 42 | 8 | 40 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 29.3413 | 117 | 8 | 118 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 52.3810 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | * | 97.7482 | 98.4645 | 97.0422 | 86.4304 | 1539 | 24 | 1542 | 47 | 8 | 17.0213 | |
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | het | 97.3349 | 98.2370 | 96.4491 | 87.4337 | 1003 | 18 | 1005 | 37 | 3 | 8.1081 | |