PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52751-52800 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2540 | 17 | 0 | 17 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 82.1429 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.5925 | 98.0163 | 99.1755 | 86.0408 | 840 | 17 | 842 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.8610 | 96.5795 | 99.1770 | 86.8328 | 480 | 17 | 482 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4483 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 83.6268 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.6137 | 98.0460 | 99.1879 | 86.1881 | 853 | 17 | 855 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.9079 | 96.6535 | 99.1952 | 86.9004 | 491 | 17 | 493 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5593 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.9219 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7044 | 96.5909 | 98.8439 | 91.2714 | 170 | 6 | 171 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.0874 | 94.3396 | 100.0000 | 92.4739 | 100 | 6 | 101 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.7660 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.0147 | 97.4308 | 98.6056 | 88.2104 | 493 | 13 | 495 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.1183 | 95.6522 | 98.6301 | 89.0019 | 286 | 13 | 288 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 85.7548 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | * | 97.9658 | 97.3025 | 98.6381 | 89.4909 | 505 | 14 | 507 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0438 | 95.4693 | 98.6711 | 90.0496 | 295 | 14 | 297 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 87.5686 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.0120 | 97.3635 | 98.6692 | 89.5407 | 517 | 14 | 519 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.1195 | 95.5836 | 98.7055 | 90.0771 | 303 | 14 | 305 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6710 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 87.7078 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 97.8444 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.2527 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.4158 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.2264 | 96.2264 | 96.2264 | 95.4132 | 102 | 4 | 102 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.1691 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9798 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.4097 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | * | 96.4602 | 96.4602 | 96.4602 | 95.8623 | 109 | 4 | 109 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3801 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4375 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.3713 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | * | 96.4912 | 96.4912 | 96.4912 | 95.9474 | 110 | 4 | 110 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4912 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4615 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.4121 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | * | 99.1319 | 98.7354 | 99.5316 | 79.6028 | 2967 | 38 | 2975 | 14 | 4 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | het | 98.8017 | 98.0369 | 99.5786 | 80.1885 | 1648 | 33 | 1654 | 7 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5854 | 109 | 3 | 109 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_siren | homalt | 99.6300 | 99.8350 | 99.4258 | 77.3924 | 1210 | 2 | 1212 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | * | 99.1501 | 99.0557 | 99.2446 | 94.2109 | 1049 | 10 | 1051 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | het | 98.9797 | 99.0706 | 98.8889 | 94.9664 | 533 | 5 | 534 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1730 | 45 | 3 | 46 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.5664 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |