PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1049 1050 1051 1052 1053 1054 1055 1056 1057 ... 1720 1721 » 52601-52650 / 86044 show all
hfeng-pmm1	INDEL	I16_PLUS	segdup	*	100.0000	100.0000	100.0000	95.4146	47	0	47	0	0
hfeng-pmm1	INDEL	I16_PLUS	segdup	het	100.0000	100.0000	100.0000	95.5140	24	0	24	0	0
hfeng-pmm1	INDEL	I16_PLUS	segdup	hetalt	100.0000	100.0000	100.0000	97.4026	4	0	4	0	0
hfeng-pmm1	INDEL	I16_PLUS	segdup	homalt	100.0000	100.0000	100.0000	94.3452	19	0	19	0	0
hfeng-pmm1	INDEL	I16_PLUS	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I16_PLUS	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I16_PLUS	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I16_PLUS	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	73.3333	4	0	4	0	0
hfeng-pmm1	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
hfeng-pmm1	INDEL	I16_PLUS	tech_badpromoters	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
hfeng-pmm1	INDEL	I1_5	*	*	99.5147	99.2699	99.7606	57.3300	149564	1100	149609	359	252	70.1950
hfeng-pmm1	INDEL	I1_5	*	het	99.6416	99.5559	99.7275	59.6258	78690	351	78673	215	113	52.5581
hfeng-pmm1	INDEL	I1_5	*	hetalt	97.1621	94.4975	99.9812	62.7564	10579	616	10637	2	2	100.0000
hfeng-pmm1	INDEL	I1_5	*	homalt	99.7725	99.7799	99.7651	52.5960	60295	133	60299	142	137	96.4789
hfeng-pmm1	INDEL	I1_5	HG002complexvar	*	99.5778	99.2956	99.8615	56.6148	33128	235	33171	46	29	63.0435
hfeng-pmm1	INDEL	I1_5	HG002complexvar	het	99.4978	99.1313	99.8669	57.6162	18031	158	18012	24	10	41.6667
hfeng-pmm1	INDEL	I1_5	HG002complexvar	hetalt	98.1752	96.5238	99.8841	71.0548	1666	60	1724	2	2	100.0000
hfeng-pmm1	INDEL	I1_5	HG002complexvar	homalt	99.8625	99.8736	99.8514	52.0252	13431	17	13435	20	17	85.0000
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	*	96.2606	94.1648	98.4519	64.4321	11635	721	11638	183	176	96.1749
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	het	90.1398	87.7647	92.6471	86.3079	746	104	693	55	49	89.0909
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	hetalt	97.1665	94.4976	99.9906	57.5817	10562	615	10618	1	1	100.0000
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	homalt	83.5249	99.3921	72.0264	83.4186	327	2	327	127	126	99.2126
hfeng-pmm1	INDEL	I1_5	decoy	*		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I1_5	decoy	het		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I1_5	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I1_5	decoy	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I1_5	func_cds	*	99.7214	99.4444	100.0000	35.2518	179	1	180	0	0
hfeng-pmm1	INDEL	I1_5	func_cds	het	99.1453	98.3051	100.0000	42.7184	58	1	59	0	0
hfeng-pmm1	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
hfeng-pmm1	INDEL	I1_5	func_cds	homalt	100.0000	100.0000	100.0000	30.8140	119	0	119	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.7305	89.6851	98.1581	66.4808	1652	190	1652	31	17	54.8387
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	95.3233	94.2598	96.4111	77.4217	624	38	591	22	8	36.3636
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2727	83.9465	100.0000	42.7114	753	144	786	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.0018	97.1731	96.8310	69.5931	275	8	275	9	9	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8795	1	0	1	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	97.1429	1	0	1	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6991	97.6504	99.7706	72.0664	15211	366	15219	35	25	71.4286
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2583	98.7709	99.7505	77.4015	6027	75	5998	15	5	33.3333
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.6119	95.3351	100.0000	63.4087	5661	277	5698	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5198	99.6042	99.4355	71.4918	3523	14	3523	20	20	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0944	96.6971	99.5326	66.9886	15546	531	15546	73	43	58.9041
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5699	97.9439	99.2039	75.0813	6288	132	6231	50	21	42.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8058	93.8094	100.0000	40.1072	5531	365	5588	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2411	99.0960	99.3867	70.6527	3727	34	3727	23	22	95.6522
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.7564	96.8254	98.7055	66.0440	610	20	610	8	2	25.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.9710	97.6879	98.2558	68.8688	338	8	338	6	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge