PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52301-52350 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | het | 98.4804 | 98.1283 | 98.8350 | 88.4918 | 4666 | 89 | 4666 | 55 | 10 | 18.1818 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | homalt | 99.4527 | 99.5940 | 99.3117 | 86.9979 | 2453 | 10 | 2453 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | * | 98.8758 | 98.7191 | 99.0331 | 88.4730 | 7784 | 101 | 7784 | 76 | 17 | 22.3684 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | het | 98.5614 | 98.2672 | 98.8573 | 88.7531 | 5104 | 90 | 5104 | 59 | 11 | 18.6441 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | homalt | 99.4794 | 99.5905 | 99.3685 | 87.8799 | 2675 | 11 | 2675 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | * | 98.8775 | 98.7104 | 99.0452 | 88.5497 | 7884 | 103 | 7884 | 76 | 17 | 22.3684 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | het | 98.5612 | 98.2523 | 98.8721 | 88.8393 | 5172 | 92 | 5172 | 59 | 11 | 18.6441 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0556 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | homalt | 99.4855 | 99.5953 | 99.3759 | 87.9341 | 2707 | 11 | 2707 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_siren | * | 99.7072 | 99.5541 | 99.8607 | 53.5315 | 145576 | 652 | 145556 | 203 | 64 | 31.5271 | |
| hfeng-pmm1 | SNP | * | map_siren | het | 99.5907 | 99.3571 | 99.8255 | 53.5727 | 90406 | 585 | 90392 | 158 | 38 | 24.0506 | |
| hfeng-pmm1 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_siren | homalt | 99.8994 | 99.8803 | 99.9184 | 53.4037 | 55090 | 66 | 55084 | 45 | 26 | 57.7778 | |
| hfeng-pmm1 | SNP | * | segdup | * | 99.7400 | 99.7934 | 99.6867 | 89.3409 | 28009 | 58 | 28003 | 88 | 11 | 12.5000 | |
| hfeng-pmm1 | SNP | * | segdup | het | 99.6248 | 99.6939 | 99.5558 | 89.5848 | 17264 | 53 | 17258 | 77 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | segdup | homalt | 99.9256 | 99.9535 | 99.8977 | 88.8973 | 10738 | 5 | 10738 | 11 | 11 | 100.0000 | |
| hfeng-pmm1 | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | tech_badpromoters | * | 99.3590 | 98.7261 | 100.0000 | 46.3668 | 155 | 2 | 155 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 42.7481 | 75 | 2 | 75 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 49.3671 | 80 | 0 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | * | * | 99.9548 | 99.9307 | 99.9789 | 16.7547 | 2084065 | 1446 | 2084007 | 440 | 67 | 15.2273 | |
| hfeng-pmm1 | SNP | ti | * | het | 99.9312 | 99.8931 | 99.9694 | 16.7684 | 1280521 | 1370 | 1280470 | 392 | 29 | 7.3980 | |
| hfeng-pmm1 | SNP | ti | * | hetalt | 99.5708 | 99.6564 | 99.4854 | 47.7130 | 580 | 2 | 580 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | * | homalt | 99.9926 | 99.9908 | 99.9944 | 16.6970 | 802964 | 74 | 802957 | 45 | 35 | 77.7778 | |
| hfeng-pmm1 | SNP | ti | HG002complexvar | * | 99.8935 | 99.8000 | 99.9872 | 17.3497 | 507419 | 1017 | 507360 | 65 | 31 | 47.6923 | |
| hfeng-pmm1 | SNP | ti | HG002complexvar | het | 99.8377 | 99.6899 | 99.9860 | 16.6225 | 313790 | 976 | 313739 | 44 | 10 | 22.7273 | |
| hfeng-pmm1 | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 38.6228 | 205 | 2 | 205 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | HG002complexvar | homalt | 99.9845 | 99.9798 | 99.9891 | 18.4732 | 193424 | 39 | 193416 | 21 | 21 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | HG002compoundhet | * | 98.2873 | 96.6987 | 99.9291 | 34.1329 | 16901 | 577 | 16902 | 12 | 8 | 66.6667 | |
| hfeng-pmm1 | SNP | ti | HG002compoundhet | het | 96.8662 | 93.9821 | 99.9329 | 37.3774 | 8933 | 572 | 8934 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.5503 | 577 | 2 | 577 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | HG002compoundhet | homalt | 99.9392 | 99.9594 | 99.9189 | 30.5967 | 7391 | 3 | 7391 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | func_cds | * | 99.9384 | 99.9637 | 99.9130 | 21.7209 | 13782 | 5 | 13780 | 12 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | func_cds | het | 99.9060 | 99.9530 | 99.8590 | 22.2902 | 8500 | 4 | 8498 | 12 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | func_cds | homalt | 99.9905 | 99.9810 | 100.0000 | 20.7037 | 5274 | 1 | 5274 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7723 | 97.8448 | 99.7176 | 64.7729 | 3178 | 70 | 3178 | 9 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.2228 | 96.9368 | 99.5434 | 64.5886 | 1962 | 62 | 1962 | 9 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||