PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51901-51950 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | homalt | 98.5337 | 99.0177 | 98.0545 | 82.5704 | 504 | 5 | 504 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | * | 98.1895 | 97.4902 | 98.8989 | 82.4896 | 3496 | 90 | 3503 | 39 | 9 | 23.0769 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | het | 97.8105 | 96.8680 | 98.7716 | 82.6711 | 2165 | 70 | 2171 | 27 | 4 | 14.8148 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | hetalt | 94.9153 | 90.3226 | 100.0000 | 87.1298 | 112 | 12 | 113 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | homalt | 99.1863 | 99.3480 | 99.0252 | 81.5332 | 1219 | 8 | 1219 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | * | 98.1873 | 97.4817 | 98.9032 | 83.5913 | 3600 | 93 | 3607 | 40 | 9 | 22.5000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | het | 97.7908 | 96.8357 | 98.7649 | 83.7444 | 2234 | 73 | 2239 | 28 | 4 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | hetalt | 94.9580 | 90.4000 | 100.0000 | 87.9958 | 113 | 12 | 115 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | homalt | 99.2082 | 99.3656 | 99.0514 | 82.7233 | 1253 | 8 | 1253 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | * | 98.1906 | 97.4707 | 98.9213 | 83.6789 | 3661 | 95 | 3668 | 40 | 9 | 22.5000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | het | 97.8030 | 96.8417 | 98.7837 | 83.8513 | 2269 | 74 | 2274 | 28 | 4 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | hetalt | 94.8207 | 90.1515 | 100.0000 | 87.7654 | 119 | 13 | 121 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | homalt | 99.2206 | 99.3755 | 99.0661 | 82.8094 | 1273 | 8 | 1273 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | * | 97.4847 | 96.5986 | 98.3871 | 87.4093 | 852 | 30 | 854 | 14 | 4 | 28.5714 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | het | 96.8885 | 95.4003 | 98.4238 | 87.4146 | 560 | 27 | 562 | 9 | 1 | 11.1111 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3975 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | homalt | 98.5965 | 98.9437 | 98.2517 | 86.4967 | 281 | 3 | 281 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | * | 97.9886 | 97.0574 | 98.9377 | 85.1509 | 2045 | 62 | 2049 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | het | 97.3032 | 95.8801 | 98.7692 | 85.2424 | 1280 | 55 | 1284 | 16 | 1 | 6.2500 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.7203 | 38 | 2 | 38 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | homalt | 99.2491 | 99.3169 | 99.1814 | 84.1205 | 727 | 5 | 727 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | * | 98.0239 | 97.0856 | 98.9805 | 86.2460 | 2132 | 64 | 2136 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | het | 97.3384 | 95.9022 | 98.8183 | 86.3315 | 1334 | 57 | 1338 | 16 | 1 | 6.2500 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.3775 | 40 | 2 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | homalt | 99.2796 | 99.3447 | 99.2147 | 85.2510 | 758 | 5 | 758 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | * | 98.0268 | 97.0787 | 98.9936 | 86.3673 | 2160 | 65 | 2164 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | het | 97.3710 | 95.9517 | 98.8330 | 86.4526 | 1351 | 57 | 1355 | 16 | 1 | 6.2500 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.5065 | 40 | 3 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | homalt | 99.2899 | 99.3540 | 99.2258 | 85.3746 | 769 | 5 | 769 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | * | 97.1639 | 96.4981 | 97.8389 | 90.4125 | 496 | 18 | 498 | 11 | 4 | 36.3636 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | het | 96.5886 | 95.3079 | 97.9042 | 90.5060 | 325 | 16 | 327 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0276 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | homalt | 98.1818 | 98.7805 | 97.5904 | 89.6894 | 162 | 2 | 162 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | * | 97.5871 | 96.6368 | 98.5562 | 87.8193 | 1293 | 45 | 1297 | 19 | 4 | 21.0526 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | het | 96.9158 | 95.4386 | 98.4394 | 87.9118 | 816 | 39 | 820 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9495 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | homalt | 98.8108 | 98.9177 | 98.7041 | 86.8354 | 457 | 5 | 457 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | * | 97.6365 | 96.7330 | 98.5570 | 88.7837 | 1362 | 46 | 1366 | 20 | 4 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | het | 96.9800 | 95.5850 | 98.4163 | 88.7575 | 866 | 40 | 870 | 14 | 1 | 7.1429 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.6427 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 88.0545 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | * | 97.5801 | 96.5949 | 98.5856 | 88.8230 | 1390 | 49 | 1394 | 20 | 4 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | het | 96.9264 | 95.4545 | 98.4444 | 88.8199 | 882 | 42 | 886 | 14 | 1 | 7.1429 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | homalt | 98.8832 | 98.9837 | 98.7830 | 88.0630 | 487 | 5 | 487 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | * | 92.4051 | 93.5897 | 91.2500 | 97.0717 | 73 | 5 | 73 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | het | 91.5888 | 92.4528 | 90.7407 | 96.9849 | 49 | 4 | 49 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 96.9376 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |