PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
84251-84300 / 86044 show all
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.7140
88.5981
95.0570
53.8425
3839449414423023002147
93.3478
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
90.9395
84.4821
98.4657
87.4931
38610709238635602167
27.7409
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
90.9395
84.4821
98.4657
87.4931
38610709238635602167
27.7409
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.1882
84.7031
89.8235
87.4240
387116991388374400387
8.7955
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.1882
84.7031
89.8235
87.4240
387116991388374400387
8.7955
qzeng-customSNPtimap_l100_m2_e0*
87.7079
79.0936
98.4279
76.3519
387251023638442614490
79.8046
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.0572
89.8904
90.2247
50.1569
3895443815990264904175
64.3297
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
60.8751
59.9982
61.7781
66.5944
3920726140395252445417134
70.0662
qzeng-customSNPtimap_l100_m2_e1*
87.8109
79.2503
98.4448
76.3141
392171026838930615490
79.6748
astatham-gatkSNP*map_l125_m2_e0*
91.3143
84.1877
99.7590
76.2743
393357388393299543
45.2632
ciseli-customSNPtvmap_siren*
87.3579
85.7022
89.0790
62.2878
393636567393154820974
20.2075
anovak-vgSNP*map_l125_m1_e0*
81.0489
87.0673
75.8087
74.5245
39465586239018124512766
22.2151
jmaeng-gatkSNPtimap_l100_m1_e0*
89.7569
82.4247
98.5209
77.3729
3950784243950059363
10.6239
ckim-gatkSNPtimap_l100_m1_e0*
89.7917
82.4352
98.5900
77.1488
3951284193950556568
12.0354
qzeng-customSNPtvmap_siren*
92.0283
86.1093
98.8212
67.3017
39550638039401470339
72.1277
jmaeng-gatkSNP*map_l100_m1_e0het
92.1457
87.4909
97.3237
81.8820
39685567439674109169
6.3245
ckim-gatkSNP*map_l100_m1_e0het
92.2588
87.5769
97.4696
81.5171
39724563539713103176
7.3715
astatham-gatkSNP*map_l125_m2_e1*
91.3125
84.1829
99.7615
76.3148
397367466397309543
45.2632
ciseli-customSNPtimap_l100_m1_e0*
86.1026
83.0465
89.3922
69.2811
3980581263974247161317
27.9262
astatham-gatkSNPtvmap_siren*
92.9445
86.9192
99.8674
62.0464
399226008399145321
39.6226
ckim-gatkSNPtvmap_siren*
92.9580
88.1058
98.3758
71.0821
4046754634045966831
4.6407
jmaeng-gatkSNPtvmap_siren*
92.8750
88.1232
98.1685
71.3358
4047554554046775531
4.1060
jmaeng-gatkSNPtimap_l100_m2_e0*
89.9408
82.7455
98.5068
78.6206
4051384484050661464
10.4235
ckim-gatkSNPtimap_l100_m2_e0*
89.9645
82.7516
98.5549
78.4080
4051684454050959470
11.7845
gduggal-snapfbINDEL*HG002complexvarhet
90.2528
87.9122
92.7215
54.1807
4062655864330033991261
37.0991
jmaeng-gatkSNP*map_l100_m2_e0het
92.2826
87.7562
97.3014
82.8537
40718568140707112970
6.2002
anovak-vgSNP*map_l125_m2_e0*
81.2942
87.1691
76.1613
76.0893
40728599540268126042812
22.3104
ckim-gatkSNP*map_l100_m2_e0het
92.3834
87.8381
97.4248
82.5144
40756564340745107778
7.2423
ciseli-customSNPtimap_l100_m2_e0*
86.2627
83.2663
89.4829
71.0430
4076881934070447841327
27.7383
astatham-gatkSNPtimap_l100_m1_e0*
92.0088
85.3122
99.8461
68.2409
408917040408846336
57.1429
jmaeng-gatkSNPtimap_l100_m2_e1*
90.0240
82.8837
98.5106
78.5961
4101584704100862064
10.3226
ckim-gatkSNPtimap_l100_m2_e1*
90.0482
82.8877
98.5628
78.3843
4101784684101059870
11.7057
anovak-vgSNP*map_l125_m2_e1*
81.3800
87.2421
76.2560
76.1127
41180602240707126752820
22.2485
jmaeng-gatkSNP*map_l100_m2_e1het
92.3544
87.8737
97.3167
82.8441
41211568741200113670
6.1620
ciseli-customSNPtimap_l100_m2_e1*
86.3257
83.3424
89.5306
71.0284
4124282434117648151336
27.7466
ckim-gatkSNP*map_l100_m2_e1het
92.4550
87.9526
97.4432
82.5075
41248565041237108278
7.2089
anovak-vgSNP*map_l100_m1_e0het
80.4155
91.0315
72.0169
72.1565
41291406840830158653407
21.4749
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3588
95.3386
99.4664
56.7621
41315202041569223143
64.1256
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.3555
90.6219
98.4100
63.4241
41416428641653673294
43.6850
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.3555
90.6219
98.4100
63.4241
41416428641653673294
43.6850
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.1122
95.6040
96.6259
60.2914
4143019054123814401303
90.4861
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8420
95.6294
98.0857
58.9442
41441189441248805768
95.4037
gduggal-snapvardINDELD1_5*homalt
90.7791
84.7811
97.6903
44.1687
4148074464411510431010
96.8360
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.2804
95.7563
96.8102
77.5473
4149618394142813651297
95.0183
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4936
95.9940
99.0408
57.8182
41599173641405401351
87.5312
gduggal-snapplatSNP*map_l125_m1_e0*
93.8560
91.8106
95.9947
80.5503
416153712416301737931
53.5982