PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85451-85500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I1_5 | * | * | 99.2891 | 98.9095 | 99.6717 | 56.6470 | 149021 | 1643 | 149065 | 491 | 422 | 85.9470 | |
| raldana-dualsentieon | INDEL | I1_5 | * | het | 99.5073 | 99.2827 | 99.7331 | 57.9285 | 78474 | 567 | 78457 | 210 | 142 | 67.6190 | |
| raldana-dualsentieon | INDEL | I1_5 | * | hetalt | 95.4134 | 91.2372 | 99.9903 | 60.4923 | 10214 | 981 | 10271 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | * | homalt | 99.6902 | 99.8428 | 99.5381 | 54.0742 | 60333 | 95 | 60337 | 280 | 279 | 99.6429 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | * | 96.7701 | 95.1388 | 98.4583 | 67.0904 | 6067 | 310 | 6067 | 95 | 85 | 89.4737 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | het | 98.2484 | 97.1302 | 99.3926 | 71.9668 | 2640 | 78 | 2618 | 16 | 8 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | hetalt | 94.2306 | 89.1325 | 99.9472 | 55.4588 | 1870 | 228 | 1892 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | homalt | 97.4343 | 99.7438 | 95.2294 | 67.8023 | 1557 | 4 | 1557 | 78 | 76 | 97.4359 | |
| raldana-dualsentieon | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | * | * | 99.4299 | 99.1168 | 99.7450 | 58.6151 | 145449 | 1296 | 145501 | 372 | 312 | 83.8710 | |
| raldana-dualsentieon | INDEL | D1_5 | * | het | 99.5220 | 99.2680 | 99.7773 | 56.3227 | 86933 | 641 | 86937 | 194 | 136 | 70.1031 | |
| raldana-dualsentieon | INDEL | D1_5 | * | hetalt | 96.8333 | 93.8702 | 99.9896 | 62.1760 | 9617 | 628 | 9660 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | * | homalt | 99.7919 | 99.9448 | 99.6394 | 61.4897 | 48899 | 27 | 48904 | 177 | 175 | 98.8701 | |
| raldana-dualsentieon | INDEL | D6_15 | * | * | 97.6719 | 96.7155 | 98.6474 | 52.2270 | 25235 | 857 | 25235 | 346 | 333 | 96.2428 | |
| raldana-dualsentieon | INDEL | D6_15 | * | het | 97.8785 | 97.4810 | 98.2792 | 59.3884 | 11300 | 292 | 11251 | 197 | 187 | 94.9239 | |
| raldana-dualsentieon | INDEL | D6_15 | * | hetalt | 96.4666 | 93.1857 | 99.9870 | 32.1144 | 7617 | 557 | 7666 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | * | homalt | 98.7805 | 99.8735 | 97.7111 | 54.0245 | 6318 | 8 | 6318 | 148 | 145 | 97.9730 | |
| raldana-dualsentieon | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D16_PLUS | * | * | 97.3178 | 96.6244 | 98.0213 | 67.0307 | 6555 | 229 | 6539 | 132 | 101 | 76.5152 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | het | 96.7544 | 97.2143 | 96.2988 | 74.5638 | 3071 | 88 | 2836 | 109 | 82 | 75.2294 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | hetalt | 96.3126 | 93.0160 | 99.8515 | 37.8079 | 1798 | 135 | 2017 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | homalt | 99.2348 | 99.6454 | 98.8277 | 68.4541 | 1686 | 6 | 1686 | 20 | 16 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | * | * | 99.8629 | 99.7865 | 99.9395 | 20.8763 | 967620 | 2070 | 967646 | 586 | 175 | 29.8635 | |
| ndellapenna-hhga | SNP | tv | * | het | 99.8309 | 99.7335 | 99.9285 | 20.7977 | 590119 | 1577 | 590138 | 422 | 45 | 10.6635 | |
| ndellapenna-hhga | SNP | tv | * | hetalt | 98.9643 | 98.7371 | 99.1926 | 47.1341 | 860 | 11 | 860 | 7 | 7 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | * | homalt | 99.9152 | 99.8722 | 99.9583 | 20.9089 | 376641 | 482 | 376648 | 157 | 123 | 78.3439 | |
| qzeng-custom | INDEL | D1_5 | * | * | 98.2982 | 97.8575 | 98.7428 | 57.2067 | 143601 | 3144 | 144677 | 1842 | 1294 | 70.2497 | |
| qzeng-custom | INDEL | D1_5 | * | het | 98.6409 | 98.8844 | 98.3986 | 58.7330 | 86597 | 977 | 96103 | 1564 | 1050 | 67.1355 | |
| qzeng-custom | INDEL | D1_5 | * | hetalt | 89.9947 | 83.6798 | 97.3404 | 85.7251 | 8573 | 1672 | 183 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | * | homalt | 99.2131 | 98.9883 | 99.4390 | 53.3870 | 48431 | 495 | 48391 | 273 | 239 | 87.5458 | |
| qzeng-custom | INDEL | D16_PLUS | * | * | 79.4045 | 91.9517 | 69.8705 | 62.5471 | 6238 | 546 | 6528 | 2815 | 413 | 14.6714 | |
| qzeng-custom | INDEL | D16_PLUS | * | het | 80.5778 | 97.4992 | 68.6613 | 61.3602 | 3080 | 79 | 4888 | 2231 | 308 | 13.8055 | |
| qzeng-custom | INDEL | D16_PLUS | * | hetalt | 78.3756 | 100.0000 | 1515 | 418 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | * | homalt | 83.8251 | 97.1040 | 73.7410 | 65.8948 | 1643 | 49 | 1640 | 584 | 105 | 17.9795 | |
| qzeng-custom | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 2.6895 | 75.5383 | 0 | 0 | 11 | 398 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 1.7730 | 70.9278 | 0 | 0 | 5 | 277 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 4.7244 | 81.1852 | 0 | 0 | 6 | 121 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | * | * | 82.3488 | 80.0000 | 84.8397 | 96.6709 | 8 | 2 | 291 | 52 | 5 | 9.6154 | |
| qzeng-custom | INDEL | C1_5 | * | het | 79.1423 | 77.7778 | 80.5556 | 96.9331 | 7 | 2 | 174 | 42 | 1 | 2.3810 | |
| qzeng-custom | INDEL | C1_5 | * | hetalt | 72.7273 | 100.0000 | 57.1429 | 96.7890 | 1 | 0 | 8 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 96.4602 | 95.9986 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |