PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
351-400 / 86044 show all | |||||||||||||||
ckim-dragen | INDEL | I6_15 | * | hetalt | 95.5238 | 91.4630 | 99.9619 | 38.0544 | 7821 | 730 | 7861 | 3 | 3 | 100.0000 | |
ckim-dragen | INDEL | I6_15 | * | homalt | 96.6294 | 99.7115 | 93.7321 | 54.6498 | 6221 | 18 | 6221 | 416 | 414 | 99.5192 | |
ckim-dragen | SNP | * | * | * | 99.8268 | 99.9524 | 99.7015 | 21.8489 | 3053166 | 1453 | 3053731 | 9143 | 533 | 5.8296 | |
ckim-dragen | SNP | * | * | het | 99.7355 | 99.9519 | 99.5199 | 24.5349 | 1872686 | 901 | 1873038 | 9035 | 444 | 4.9142 | |
ckim-dragen | SNP | * | * | hetalt | 99.3162 | 99.7704 | 98.8662 | 49.3103 | 869 | 2 | 872 | 10 | 9 | 90.0000 | |
ckim-dragen | SNP | * | * | homalt | 99.9725 | 99.9534 | 99.9917 | 17.1093 | 1179611 | 550 | 1179821 | 98 | 80 | 81.6327 | |
ckim-dragen | SNP | ti | * | * | 99.8327 | 99.9538 | 99.7120 | 20.2602 | 2084547 | 964 | 2084816 | 6022 | 378 | 6.2770 | |
ckim-dragen | SNP | ti | * | het | 99.7466 | 99.9566 | 99.5375 | 22.8315 | 1281335 | 556 | 1281494 | 5955 | 318 | 5.3401 | |
ckim-dragen | SNP | ti | * | hetalt | 99.1507 | 99.8282 | 98.4823 | 48.3899 | 581 | 1 | 584 | 9 | 9 | 100.0000 | |
ckim-dragen | SNP | ti | * | homalt | 99.9710 | 99.9493 | 99.9928 | 15.7227 | 802631 | 407 | 802738 | 58 | 51 | 87.9310 | |
ckim-dragen | SNP | tv | * | * | 99.8136 | 99.9495 | 99.6782 | 25.0811 | 969200 | 490 | 969499 | 3130 | 164 | 5.2396 | |
ckim-dragen | SNP | tv | * | het | 99.7113 | 99.9417 | 99.4820 | 27.9772 | 591351 | 345 | 591544 | 3080 | 126 | 4.0909 | |
ckim-dragen | SNP | tv | * | hetalt | 99.3162 | 99.7704 | 98.8662 | 49.3103 | 869 | 2 | 872 | 10 | 9 | 90.0000 | |
ckim-dragen | SNP | tv | * | homalt | 99.9757 | 99.9621 | 99.9894 | 19.9141 | 376980 | 143 | 377083 | 40 | 29 | 72.5000 | |
ckim-gatk | INDEL | * | * | * | 99.2271 | 99.1551 | 99.2992 | 60.7185 | 341631 | 2911 | 341492 | 2410 | 1553 | 64.4398 | |
ckim-gatk | INDEL | * | * | het | 99.4669 | 99.6616 | 99.2730 | 62.2737 | 193476 | 657 | 193095 | 1414 | 578 | 40.8769 | |
ckim-gatk | INDEL | * | * | hetalt | 95.5159 | 91.6749 | 99.6928 | 55.9040 | 23136 | 2101 | 23365 | 72 | 70 | 97.2222 | |
ckim-gatk | INDEL | * | * | homalt | 99.5712 | 99.8778 | 99.2664 | 58.9388 | 125019 | 153 | 125032 | 924 | 905 | 97.9437 | |
ckim-gatk | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-gatk | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-gatk | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-gatk | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-gatk | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
ckim-gatk | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
ckim-gatk | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
ckim-gatk | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
ckim-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
ckim-gatk | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-gatk | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ckim-gatk | INDEL | D16_PLUS | * | * | 97.7762 | 97.9953 | 97.5581 | 71.4634 | 6648 | 136 | 6632 | 166 | 106 | 63.8554 | |
ckim-gatk | INDEL | D16_PLUS | * | het | 97.6163 | 99.3985 | 95.8968 | 79.2687 | 3140 | 19 | 2898 | 124 | 70 | 56.4516 | |
ckim-gatk | INDEL | D16_PLUS | * | hetalt | 96.6957 | 94.2059 | 99.3207 | 38.1824 | 1821 | 112 | 2047 | 14 | 14 | 100.0000 | |
ckim-gatk | INDEL | D16_PLUS | * | homalt | 99.0314 | 99.7045 | 98.3673 | 70.9863 | 1687 | 5 | 1687 | 28 | 22 | 78.5714 | |
ckim-gatk | INDEL | D1_5 | * | * | 99.4755 | 99.4262 | 99.5247 | 61.4945 | 145903 | 842 | 145958 | 697 | 326 | 46.7719 | |
ckim-gatk | INDEL | D1_5 | * | het | 99.6268 | 99.8162 | 99.4381 | 60.7761 | 87413 | 161 | 87419 | 494 | 126 | 25.5061 | |
ckim-gatk | INDEL | D1_5 | * | hetalt | 96.5155 | 93.6554 | 99.5558 | 62.7234 | 9595 | 650 | 9637 | 43 | 43 | 100.0000 | |
ckim-gatk | INDEL | D1_5 | * | homalt | 99.8051 | 99.9366 | 99.6739 | 62.4819 | 48895 | 31 | 48902 | 160 | 157 | 98.1250 | |
ckim-gatk | INDEL | D6_15 | * | * | 98.2230 | 97.9802 | 98.4670 | 55.8597 | 25565 | 527 | 25564 | 398 | 344 | 86.4322 | |
ckim-gatk | INDEL | D6_15 | * | het | 98.7882 | 99.4997 | 98.0868 | 64.1200 | 11534 | 58 | 11484 | 224 | 173 | 77.2321 | |
ckim-gatk | INDEL | D6_15 | * | hetalt | 96.8620 | 94.3602 | 99.5001 | 32.9523 | 7713 | 461 | 7762 | 39 | 39 | 100.0000 | |
ckim-gatk | INDEL | D6_15 | * | homalt | 98.8810 | 99.8735 | 97.9079 | 55.6525 | 6318 | 8 | 6318 | 135 | 132 | 97.7778 | |
ckim-gatk | INDEL | I16_PLUS | * | * | 97.3609 | 96.6128 | 98.1207 | 70.7109 | 6161 | 216 | 6161 | 118 | 83 | 70.3390 | |
ckim-gatk | INDEL | I16_PLUS | * | het | 98.3735 | 98.3444 | 98.4027 | 76.2086 | 2673 | 45 | 2649 | 43 | 10 | 23.2558 | |
ckim-gatk | INDEL | I16_PLUS | * | hetalt | 95.7167 | 92.0877 | 99.6434 | 54.9150 | 1932 | 166 | 1956 | 7 | 6 | 85.7143 | |
ckim-gatk | INDEL | I16_PLUS | * | homalt | 97.7080 | 99.6797 | 95.8128 | 71.8495 | 1556 | 5 | 1556 | 68 | 67 | 98.5294 | |
ckim-gatk | INDEL | I1_5 | * | * | 99.3427 | 99.1491 | 99.5371 | 59.3239 | 149382 | 1282 | 149430 | 695 | 401 | 57.6978 | |
ckim-gatk | INDEL | I1_5 | * | het | 99.5633 | 99.6774 | 99.4495 | 61.8943 | 78786 | 255 | 78766 | 436 | 147 | 33.7156 | |
ckim-gatk | INDEL | I1_5 | * | hetalt | 95.6301 | 91.6749 | 99.9419 | 60.1212 | 10263 | 932 | 10325 | 6 | 5 | 83.3333 | |
ckim-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8428 | 99.5825 | 55.2232 | 60333 | 95 | 60339 | 253 | 249 | 98.4190 |