PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1-50 / 86044 show all
rpoplin-dv42SNPtvmap_l125_m2_e0hetalt
95.2381
100.0000
90.9091
86.5854
3003033
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e1hetalt
93.0233
100.0000
86.9565
88.8889
2002033
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.1349
27362273611
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e0homalt
99.2738
98.7754
99.7773
74.0315
403350403399
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e0hetalt
93.0233
100.0000
86.9565
88.7255
2002033
100.0000
rpoplin-dv42SNPtvmap_l150_m1_e0homalt
99.2485
98.7329
99.7695
71.6659
389650389699
100.0000
rpoplin-dv42SNPtvmap_l150_m1_e0hetalt
93.0233
100.0000
86.9565
87.1508
2002033
100.0000
rpoplin-dv42SNP*map_l100_m0_e0hetalt
91.4286
100.0000
84.2105
84.6774
1601633
100.0000
rpoplin-dv42SNP*map_l100_m1_e0hetalt
96.4706
100.0000
93.1818
83.5821
4104133
100.0000
rpoplin-dv42SNP*map_l100_m2_e0hetalt
96.5517
100.0000
93.3333
85.0993
4204233
100.0000
rpoplin-dv42SNP*map_l100_m2_e1hetalt
96.6292
100.0000
93.4783
84.9673
4304333
100.0000
rpoplin-dv42SNP*map_l125_m0_e0hetalt
85.7143
100.0000
75.0000
88.4615
90933
100.0000
rpoplin-dv42SNP*map_l125_m1_e0hetalt
95.2381
100.0000
90.9091
84.5794
3003033
100.0000
rpoplin-dv42SNP*map_l125_m2_e0hetalt
95.2381
100.0000
90.9091
86.5854
3003033
100.0000
rpoplin-dv42SNP*map_l125_m2_e1hetalt
95.2381
100.0000
90.9091
86.6397
3003033
100.0000
rpoplin-dv42SNP*map_l150_m0_e0hetalt
75.0000
100.0000
60.0000
94.1176
30322
100.0000
rpoplin-dv42SNP*map_l150_m1_e0hetalt
93.0233
100.0000
86.9565
87.1508
2002033
100.0000
rpoplin-dv42SNP*map_l150_m2_e0hetalt
93.0233
100.0000
86.9565
88.7255
2002033
100.0000
rpoplin-dv42SNP*map_l150_m2_e1hetalt
93.0233
100.0000
86.9565
88.8889
2002033
100.0000
rpoplin-dv42SNP*map_l250_m0_e0homalt
97.8208
96.3434
99.3443
91.6882
6062360644
100.0000
rpoplin-dv42SNPtvmap_l150_m0_e0homalt
98.3607
97.1386
99.6139
76.6034
129038129055
100.0000
rpoplin-dv42SNP*map_l250_m1_e0homalt
98.6481
97.7670
99.5453
86.6597
24085524081111
100.0000
rpoplin-dv42SNPtvmap_l150_m0_e0hetalt
75.0000
100.0000
60.0000
94.1176
30322
100.0000
rpoplin-dv42SNP*map_l250_m2_e1homalt
98.7018
97.9029
99.5138
87.8305
26615726611313
100.0000
rpoplin-dv42SNP*map_sirenhetalt
98.1818
100.0000
96.4286
79.8561
8108133
100.0000
rpoplin-dv42SNP*segduphomalt
99.8140
99.8883
99.7398
89.1939
1073112107312828
100.0000
rpoplin-dv42SNPtvmap_l125_m2_e1homalt
99.4382
99.0780
99.8010
69.8334
60185660181212
100.0000
rpoplin-dv42SNPtvmap_l125_m2_e1hetalt
95.2381
100.0000
90.9091
86.6397
3003033
100.0000
rpoplin-dv42SNP*tech_badpromoters*
98.7261
98.7261
98.7261
46.9595
155215522
100.0000
rpoplin-dv42SNP*tech_badpromotershet
98.7013
98.7013
98.7013
42.1053
7617611
100.0000
rpoplin-dv42SNPtvmap_l125_m2_e0homalt
99.4329
99.0693
99.7991
69.7738
59615659611212
100.0000
rpoplin-dv42SNP*tech_badpromotershomalt
98.7500
98.7500
98.7500
50.9202
7917911
100.0000
rpoplin-dv42SNPti*hetalt
99.4012
99.8282
98.9779
50.2542
581158166
100.0000
rpoplin-dv42SNPtiHG002complexvarhetalt
99.0385
99.5169
98.5646
34.6875
206120633
100.0000
rpoplin-dv42SNPtimap_l125_m0_e0hetalt
88.8889
100.0000
80.0000
86.3014
80822
100.0000
rpoplin-dv42SNPtimap_l125_m2_e0hetalt
96.0000
100.0000
92.3077
84.4311
2402422
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7923
99.6445
99.9406
65.1625
16826168211
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.9532
99.9532
99.9531
38.2523
21371213311
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.9420
99.9130
99.9710
37.2906
34473344311
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9043
99.9521
44.5722
62626626233
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9262
99.9262
45.5021
40623406233
100.0000
rpoplin-dv42SNPtimap_l125_m1_e0hetalt
96.0000
100.0000
92.3077
81.6901
2402422
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
100.0000
85.7143
92.0455
60611
100.0000
rpoplin-dv42SNPtimap_l100_m2_e0hetalt
96.7742
100.0000
93.7500
84.0796
3003022
100.0000
rpoplin-dv42SNPtimap_l100_m0_e0hetalt
93.3333
100.0000
87.5000
82.4176
1401422
100.0000
rpoplin-dv42SNPtimap_l100_m1_e0hetalt
96.6667
100.0000
93.5484
82.7778
2902922
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9299
99.9299
99.9299
28.6857
14261142611
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3401
4114111
100.0000
rpoplin-dv42SNPtimap_l125_m2_e1hetalt
96.0000
100.0000
92.3077
84.5238
2402422
100.0000