PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1751-1800 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 36 | 76 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_siren | homalt | 68.1692 | 93.3993 | 53.6710 | 71.9974 | 1132 | 80 | 1155 | 997 | 947 | 94.9850 | |
| anovak-vg | INDEL | I1_5 | segdup | * | 58.1085 | 58.4514 | 57.7697 | 94.2442 | 619 | 440 | 632 | 462 | 397 | 85.9307 | |
| anovak-vg | INDEL | I1_5 | segdup | het | 40.6839 | 28.2528 | 72.6496 | 97.2794 | 152 | 386 | 170 | 64 | 21 | 32.8125 | |
| anovak-vg | INDEL | I1_5 | segdup | hetalt | 0.0000 | 27.0833 | 0.0000 | 0.0000 | 13 | 35 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | segdup | homalt | 68.8866 | 95.9831 | 53.7209 | 91.7355 | 454 | 19 | 462 | 398 | 376 | 94.4724 | |
| anovak-vg | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I1_5 | tech_badpromoters | * | 63.6735 | 54.5455 | 76.4706 | 51.4286 | 12 | 10 | 13 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I1_5 | tech_badpromoters | het | 37.5000 | 25.0000 | 75.0000 | 69.2308 | 2 | 6 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | tech_badpromoters | homalt | 72.8745 | 69.2308 | 76.9231 | 40.9091 | 9 | 4 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | * | * | 44.4248 | 38.7222 | 52.0973 | 38.6048 | 9612 | 15211 | 9514 | 8748 | 6474 | 74.0055 | |
| anovak-vg | INDEL | I6_15 | * | het | 35.7228 | 26.3530 | 55.4313 | 44.2246 | 2644 | 7389 | 4312 | 3467 | 1789 | 51.6008 | |
| anovak-vg | INDEL | I6_15 | * | hetalt | 0.0000 | 22.5588 | 0.0000 | 0.0000 | 1929 | 6622 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | * | homalt | 61.4755 | 80.7661 | 49.6232 | 33.6435 | 5039 | 1200 | 5202 | 5281 | 4685 | 88.7143 | |
| anovak-vg | INDEL | I6_15 | HG002complexvar | * | 48.0486 | 41.4858 | 57.0779 | 45.2877 | 1988 | 2804 | 2008 | 1510 | 1270 | 84.1060 | |
| anovak-vg | INDEL | I6_15 | HG002complexvar | het | 40.0214 | 28.2378 | 68.6825 | 52.4803 | 665 | 1690 | 954 | 435 | 281 | 64.5977 | |
| anovak-vg | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 24.9387 | 0.0000 | 0.0000 | 305 | 918 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | HG002complexvar | homalt | 62.2576 | 83.8550 | 49.5068 | 39.2928 | 1018 | 196 | 1054 | 1075 | 989 | 92.0000 | |
| anovak-vg | INDEL | I6_15 | HG002compoundhet | * | 31.2822 | 22.7666 | 49.9744 | 31.5356 | 1998 | 6778 | 1954 | 1956 | 1488 | 76.0736 | |
| anovak-vg | INDEL | I6_15 | HG002compoundhet | het | 35.5369 | 25.4808 | 58.7053 | 30.0691 | 53 | 155 | 1723 | 1212 | 975 | 80.4455 | |
| anovak-vg | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 22.5606 | 0.0000 | 0.0000 | 1926 | 6611 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | HG002compoundhet | homalt | 34.1743 | 61.2903 | 23.6923 | 35.6011 | 19 | 12 | 231 | 744 | 513 | 68.9516 | |
| anovak-vg | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | func_cds | * | 63.7892 | 60.4651 | 67.5000 | 37.5000 | 26 | 17 | 27 | 13 | 10 | 76.9231 | |
| anovak-vg | INDEL | I6_15 | func_cds | het | 56.0784 | 45.8333 | 72.2222 | 40.0000 | 11 | 13 | 13 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | func_cds | homalt | 75.6757 | 93.3333 | 63.6364 | 35.2941 | 14 | 1 | 14 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 23.7087 | 15.9091 | 46.5116 | 54.5317 | 133 | 703 | 140 | 161 | 125 | 77.6398 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 28.1418 | 19.8381 | 48.4018 | 54.7521 | 49 | 198 | 106 | 113 | 90 | 79.6460 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 9.6226 | 0.0000 | 0.0000 | 51 | 479 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 47.6231 | 55.9322 | 41.4634 | 53.9326 | 33 | 26 | 34 | 48 | 35 | 72.9167 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 39.2875 | 29.5634 | 58.5440 | 45.2777 | 1571 | 3743 | 3080 | 2181 | 1823 | 83.5855 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 37.7291 | 27.7742 | 58.8070 | 42.9448 | 428 | 1113 | 2297 | 1609 | 1324 | 82.2871 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 21.6987 | 0.0000 | 0.0000 | 677 | 2443 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.8608 | 71.3629 | 57.7860 | 51.0477 | 466 | 187 | 783 | 572 | 499 | 87.2378 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 37.5716 | 28.2822 | 55.9480 | 46.5176 | 1788 | 4534 | 2582 | 2033 | 1650 | 81.1608 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 36.8196 | 27.4987 | 55.6992 | 44.8224 | 542 | 1429 | 1852 | 1473 | 1170 | 79.4297 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 20.2779 | 0.0000 | 0.0000 | 715 | 2811 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 60.2265 | 64.3636 | 56.5891 | 50.4418 | 531 | 294 | 730 | 560 | 480 | 85.7143 | |