PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
84701-84750 / 86044 show all
eyeh-varpipeSNPtimap_l100_m2_e0*
99.3504
99.7181
98.9854
68.9913
488231384790349132
6.5173
ltrigg-rtg2SNPtimap_l100_m2_e1*
99.2480
98.6784
99.8242
55.9018
48831654488338619
22.0930
cchapple-customINDELD1_5*homalt
99.7503
99.8385
99.6622
57.7109
488477948389164151
92.0732
hfeng-pmm2INDELD1_5*homalt
99.8457
99.8467
99.8447
59.0004
4885175488557674
97.3684
hfeng-pmm1INDELD1_5*homalt
99.8651
99.8549
99.8753
58.6796
4885571488596160
98.3607
jlack-gatkINDELD1_5*homalt
99.6645
99.8651
99.4647
59.9060
488606648867263260
98.8593
hfeng-pmm3INDELD1_5*homalt
99.8825
99.8835
99.8815
58.1721
4886957488745856
96.5517
ckim-dragenINDELD1_5*homalt
99.6542
99.8998
99.4098
63.4062
488774948847290286
98.6207
ckim-vqsrINDELD1_5*homalt
99.7969
99.9203
99.6738
62.4858
488873948894160157
98.1250
jmaeng-gatkINDELD1_5*homalt
99.7928
99.9285
99.6576
62.5365
488913548898168166
98.8095
ckim-gatkINDELD1_5*homalt
99.8051
99.9366
99.6739
62.4819
488953148902160157
98.1250
jli-customINDELD1_5*homalt
99.8764
99.9428
99.8102
61.2620
4889828489049390
96.7742
astatham-gatkINDELD1_5*homalt
99.8143
99.9448
99.6841
62.4034
488992748904155152
98.0645
raldana-dualsentieonINDELD1_5*homalt
99.7919
99.9448
99.6394
61.4897
488992748904177175
98.8701
dgrover-gatkINDELD1_5*homalt
99.8204
99.9489
99.6922
62.5668
489012548906151149
98.6755
bgallagher-sentieonINDELD1_5*homalt
99.7512
99.9530
99.5502
62.3527
489032348908221219
99.0950
ltrigg-rtg1SNPtimap_l100_m2_e1*
99.3168
98.8481
99.7899
59.0336
489155704891710329
28.1553
ndellapenna-hhgaSNPtimap_l100_m2_e1*
99.3624
98.8906
99.8388
63.3822
48936549489387940
50.6329
ghariani-varprowlSNPtimap_l100_m2_e1*
98.6004
99.0118
98.1924
70.8832
4899648948998902186
20.6208
jlack-gatkSNPtimap_l100_m2_e1*
97.5095
99.1108
95.9591
74.4631
49045440490382065195
9.4431
gduggal-bwafbSNPtimap_l100_m2_e1*
99.1089
99.1189
99.0989
68.4487
4904943649051446108
24.2152
egarrison-hhgaSNPtimap_l100_m2_e1*
99.5683
99.2846
99.8537
64.5157
49131354491327232
44.4444
rpoplin-dv42SNPtimap_l100_m2_e1*
99.4666
99.2947
99.6390
64.7230
4913634949129178121
67.9775
ckim-dragenSNPtimap_l100_m2_e1*
98.6777
99.2968
98.0664
68.9837
4913734849145969108
11.1455
jli-customSNPtimap_l100_m2_e1*
99.5011
99.3412
99.6614
62.5257
491593264915716750
29.9401
raldana-dualsentieonSNPtimap_l100_m2_e1*
99.3433
99.3594
99.3272
64.7652
491683174916133319
5.7057
hfeng-pmm1SNPtimap_l100_m2_e1*
99.5757
99.3634
99.7889
64.0077
491703154916310432
30.7692
anovak-vgSNP*map_sirenhomalt
93.9262
89.1653
99.2241
49.9600
49180597648469379316
83.3773
ckim-isaacSNPtimap_sirenhet
88.1134
78.8433
99.8538
52.2793
491841319849191726
8.3333
dgrover-gatkSNPtimap_l100_m2_e1*
99.5279
99.4766
99.5792
67.5880
492262594921920850
24.0385
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
hfeng-pmm2SNPtimap_l100_m2_e1*
99.5423
99.5494
99.5352
66.9275
492622234925523030
13.0435
hfeng-pmm3SNPtimap_l100_m2_e1*
99.6774
99.5898
99.7651
64.5884
492822034927511621
18.1034
eyeh-varpipeSNPtimap_l100_m2_e1*
99.3531
99.7211
98.9878
69.0049
493471384841049532
6.4647
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
79.5775
77.4363
81.8404
75.0483
4989314538498401105910522
95.1442
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.9251
78.3877
83.6323
72.4014
50506139255017198199240
94.1033
gduggal-bwaplatSNP*map_l100_m1_e0*
82.4562
70.4418
99.4115
81.1732
51002214015101430283
27.4834
ciseli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
79.4183
79.5592
79.2778
75.7467
512601317051089133548419
63.0448
astatham-gatkSNPtimap_sirenhet
90.2825
82.3747
99.8698
61.4644
5138710995513786730
44.7761
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5683
79.9506
83.2528
70.9561
515131291852192104997538
71.7973
ciseli-customSNP*map_sirenhomalt
93.3935
93.4404
93.3467
52.8475
5153836185121036502749
75.3151
gduggal-snapplatINDEL*HG002complexvar*
75.2674
67.2243
85.4968
64.1998
51721252175592694871463
15.4211
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.4632
80.3154
98.4508
79.5350
517481268351729814499
61.3022
gduggal-snapvardINDELI1_5*homalt
92.2555
85.9022
99.6235
34.4127
51909851951074193178
92.2280
ckim-vqsrSNPtimap_sirenhet
91.0834
83.9713
99.5117
71.3937
5238399995237625720
7.7821
gduggal-snapplatSNP*map_sirenhomalt
97.4154
95.0214
99.9332
54.3867
524102746523613523
65.7143
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.5147
94.2784
98.8597
54.0704
52448318352797609355
58.2923
gduggal-bwaplatSNP*map_l100_m2_e0*
82.8217
70.9791
99.4075
82.3292
52499214655251131386
27.4760
gduggal-snapvardSNP*map_sirenhomalt
98.0593
96.3449
99.8358
52.8740
531402016522958667
77.9070
gduggal-bwaplatSNP*map_l100_m2_e1*
82.9577
71.1789
99.4078
82.2985
53197215405320931787
27.4448