PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
251-300 / 86044 show all
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
55.6919
47.1555
68.0020
66.7689
15086169061797784593479
41.1278
asubramanian-gatkSNP*map_l100_m2_e0homalt
55.9994
38.8911
99.9813
79.7534
10704168191070420
0.0000
gduggal-bwaplatINDELI1_5**
93.7478
88.8514
99.2155
64.5183
133867167971337981058675
63.7996
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50*
63.5899
54.1867
76.9418
62.7693
19828167642272468102991
43.9207
asubramanian-gatkSNP*map_l100_m1_e0homalt
55.1894
38.1143
99.9806
78.4662
10292167111029220
0.0000
gduggal-snapplatINDELD6_15**
49.9163
35.9727
81.5114
64.7243
93861670680681830539
29.4536
mlin-fermikitSNP*HG002complexvarhet
98.1632
96.4217
99.9688
17.2653
4488431665744874414023
16.4286
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3711
0.0000
0.0000
6216643000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.3711
0.0000
0.0000
6216643000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.7543
0.0000
0.0000
12616579000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.7543
0.0000
0.0000
12616579000
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.8620
0.0000
0.0000
14416561000
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.8620
0.0000
0.0000
14416561000
asubramanian-gatkSNPtiHG002complexvar*
98.3380
96.7457
99.9835
17.8536
491890165464918308136
44.4444
gduggal-snapvardSNPtiHG002complexvar*
97.8937
96.7473
99.0676
19.7850
4918981653848303945461783
39.2213
jmaeng-gatkSNP***
99.6144
99.4608
99.7686
23.7289
30381471647230380017046253
3.5907
gduggal-bwaplatSNPtimap_siren*
90.8656
83.6301
99.4716
68.7099
839271642883958446118
26.4574
anovak-vgSNPtiHG002complexvar*
97.6154
96.7854
98.4597
17.8294
4920931634448465575826075
80.1240
asubramanian-gatkSNPti*homalt
98.9721
97.9680
99.9969
16.0441
786720163187867112422
91.6667
gduggal-bwaplatINDELD1_5**
93.7723
88.9284
99.1742
65.9734
130498162471304301086611
56.2615
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50*
57.8545
55.6351
60.2584
48.5091
2035816234203331341013207
98.4862
ckim-isaacSNPtimap_l100_m2_e1*
80.3859
67.2749
99.8441
64.2491
3329116194332955210
19.2308
mlin-fermikitSNP*map_l125_m2_e1het
62.1228
45.4352
98.1839
65.4086
1346716173134622498
3.2129
eyeh-varpipeINDEL**hetalt
52.2077
35.9353
95.4130
76.9125
90691616811066532505
94.9248
eyeh-varpipeINDEL*HG002compoundhethetalt
52.4540
35.9293
97.1234
60.7545
90471613310973325315
96.9231
gduggal-snapplatINDEL**hetalt
51.2002
36.0859
88.1005
81.7746
91071613091511236915
74.0291
gduggal-snapplatINDEL*HG002compoundhethetalt
52.0071
36.1279
92.7918
75.2011
9097160839127709591
83.3568
mlin-fermikitSNP*map_l125_m2_e0het
61.8597
45.1531
98.1895
65.2404
1323816080132332448
3.2787
ckim-isaacSNPtimap_l100_m2_e0*
80.3204
67.1841
99.8422
64.2807
3289416067328985210
19.2308
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
4.0108
0.0000
0.0000
67016035000
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
4.0108
0.0000
0.0000
67016035000
ckim-vqsrSNP*map_l150_m2_e1*
66.6447
50.3105
98.6844
91.5888
1620516005162022163
1.3889
asubramanian-gatkSNPtimap_l100_m2_e1het
65.2727
48.4981
99.7873
85.9875
1501515945150113212
37.5000
ckim-isaacSNPtimap_l100_m1_e0*
80.0185
66.7647
99.8378
62.0110
3200115930320055210
19.2308
ghariani-varprowlINDELD1_5**
89.8931
89.1478
90.6510
61.1738
130819159251306781347711237
83.3791
gduggal-snapplatINDEL*HG002complexvarhet
73.0648
65.5393
82.5428
64.5149
3028715925329426967459
6.5882
ckim-gatkSNP***
99.6466
99.4788
99.8150
23.5123
30386981592130385525632250
4.4389
mlin-fermikitSNP*map_l125_m1_e0het
60.7541
43.9737
98.2445
60.8741
1248515907124802238
3.5874
ckim-vqsrSNP*map_l100_m2_e1homalt
59.9673
42.8299
99.9664
78.5551
11905158911190543
75.0000
gduggal-snapvardINDEL**hetalt
0.0000
37.0438
0.0000
0.0000
934815887000
ghariani-varprowlINDEL**homalt
92.0100
87.3111
97.2434
45.5820
1092891588310918330952195
70.9208
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
54.6126
50.3907
59.6067
38.4218
1612115871225511528211968
78.3144
ckim-vqsrSNP*map_l150_m2_e0*
66.5265
50.1758
98.6845
91.5836
1598215870159792133
1.4085
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
78.5574
75.3845
82.0092
73.4719
4857115860485241064510484
98.4876
asubramanian-gatkSNPtimap_l100_m2_e0het
65.0317
48.2333
99.7838
86.0511
1477015852147663212
37.5000
gduggal-snapvardINDEL*HG002compoundhethetalt
0.0000
37.0482
0.0000
0.0000
932815850000
jpowers-varprowlINDEL**homalt
92.2554
87.3566
97.7363
45.3284
1093461582610923325302235
88.3399
anovak-vgINDELD1_5**
90.2130
89.2296
91.2183
56.6455
13094015805132532127599010
70.6168
anovak-vgSNP*HG002complexvarhet
97.3572
96.6062
98.1199
19.3647
4497021579843902284126308
74.9881
ckim-vqsrSNP*map_l100_m2_e0homalt
59.7529
42.6116
99.9659
78.6625
11728157951172843
75.0000