PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
101-150 / 86044 show all
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.2628
41.8345
62.9440
73.1508
181292520621603127184309
33.8811
gduggal-bwavardINDEL**hetalt
0.0000
0.4042
0.0000
0.0000
10225135000
anovak-vgSNPti*het
98.0963
98.0413
98.1515
22.3908
1256788251091253632236109204
38.9835
gduggal-bwavardINDEL*HG002compoundhethetalt
0.0000
0.3892
0.0000
0.0000
9825082000
jpowers-varprowlINDEL**hetalt
0.0000
0.7648
0.0000
0.0000
19325044000
ghariani-varprowlINDEL**hetalt
0.0000
0.8995
0.0000
0.0000
22725010000
jpowers-varprowlINDEL*HG002compoundhethetalt
0.0000
0.7625
0.0000
0.0000
19224988000
ghariani-varprowlINDEL*HG002compoundhethetalt
0.0000
0.8975
0.0000
0.0000
22624954000
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.4538
73.6260
75.3005
77.0932
6953924910694702278721717
95.3043
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.9320
73.6508
76.2585
70.2157
69561248861220353799331398
82.6415
asubramanian-gatkSNP*map_l100_m2_e1het
64.0057
47.1171
99.7652
87.0062
2209724801220915214
26.9231
gduggal-bwaplatSNPtv**
98.5599
97.4574
99.6876
31.4101
945035246559452542962440
14.8548
asubramanian-gatkSNP*map_l100_m2_e0het
63.7840
46.8782
99.7614
87.0574
2175124648217455214
26.9231
gduggal-bwaplatSNP**homalt
98.9364
97.9135
99.9810
18.7279
1155537246241155217220194
88.1818
asubramanian-gatkSNP*map_l100_m1_e0het
63.0315
46.0636
99.7898
86.5707
2089424465208884412
27.2727
ciseli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
73.7262
74.1156
73.3408
74.2090
7000024447701712550716983
66.5817
ckim-isaacSNPtimap_siren*
86.1284
75.6983
99.8922
49.9174
7596724388759758216
19.5122
ciseli-customINDEL**hetalt
0.0000
3.4156
0.0000
0.0000
86224375000
mlin-fermikitSNPtimap_siren*
84.2869
75.7361
95.0143
45.5372
76005243507600139883501
87.7884
gduggal-snapvardSNP*HG002complexvar*
97.8941
96.7741
99.0404
21.0357
7300482433670836268632537
36.9663
ciseli-customINDEL*HG002compoundhethetalt
0.0000
3.4114
0.0000
0.0000
85924321000
gduggal-bwavardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
75.4546
74.3184
76.6261
71.7256
7019324256701322139320093
93.9232
astatham-gatkSNP***
99.5934
99.2091
99.9807
19.0428
3030461241583030315584162
27.7397
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
46.9190
44.4652
49.6593
57.4245
1926924066192421950619313
99.0106
ckim-isaacSNP*HG002complexvarhomalt
95.6391
91.6604
99.9788
17.3239
264509240662645635645
80.3571
asubramanian-gatkSNP*map_l150_m2_e1*
40.4494
25.3710
99.7071
94.4964
8172240388169246
25.0000
ckim-isaacSNPti*homalt
98.4855
97.0214
99.9944
13.4256
779120239197791534432
72.7273
ckim-vqsrSNPtimap_siren*
86.3605
76.1935
99.6585
68.7036
76464238917645126225
9.5420
asubramanian-gatkSNP*map_l150_m2_e0*
40.2806
25.2386
99.7022
94.5086
8039238138036246
25.0000
astatham-gatkSNP**het
99.3521
98.7393
99.9725
20.1637
184996723620184984550895
18.7008
ckim-vqsrSNP**homalt
98.9894
98.0027
99.9961
17.7187
11565902357111565674541
91.1111
mlin-fermikitSNP*map_l125_m2_e1*
63.8417
50.2034
87.6540
61.8934
23697235052369233372934
87.9233
mlin-fermikitSNP*map_l125_m2_e0*
63.6201
49.9497
87.5929
61.7303
23338233852333333052908
87.9879
asubramanian-gatkSNP*map_sirenhomalt
73.1014
57.6093
99.9906
63.4885
31775233813176632
66.6667
asubramanian-gatkSNP*map_l150_m1_e0*
38.6014
23.9309
99.7548
94.4087
7325232847322185
27.7778
anovak-vgSNP*HG002complexvar*
97.6964
96.9184
98.4870
19.4533
73113823247712315109438438
77.1087
qzeng-customSNP***
99.4966
99.2413
99.7533
22.5407
303145823176301298374521530
20.5314
mlin-fermikitSNP*map_l125_m1_e0*
62.6787
48.9002
87.2681
57.2976
22165231622216032332859
88.4318
asubramanian-gatkSNP*map_l100_m0_e0*
45.8193
29.7342
99.8160
91.0946
9765230769765186
33.3333
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
41.5565
39.2117
44.1996
50.5594
1486223040148441874018573
99.1089
gduggal-bwaplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
85.3226
75.6324
97.8608
79.5261
7143423015714091561832
53.2992
ciseli-customSNPti**
98.3062
98.8974
97.7221
19.7040
2062524229942057571479637893
16.4564
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
asubramanian-gatkSNPti*het
99.0688
98.2225
99.9298
21.0842
125910522786125905588467
7.5792
ciseli-customSNP*HG002complexvar*
95.9712
96.9985
94.9655
20.7202
73174222643718679381008358
21.9370
gduggal-snapplatSNPti**
99.1814
98.9158
99.4485
24.4080
2062907226112063333114431808
15.8001
gduggal-snapvardSNPti**
99.1158
98.9272
99.3052
22.3384
2063143223742054412143732372
16.5032
anovak-vgINDEL*HG002complexvar*
72.8155
71.0364
74.6860
53.4026
5465422284560691900416560
87.1395
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.3682
49.0920
51.7125
68.7841
2127422061212441983719439
97.9936