PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
901-950 / 86044 show all
qzeng-customSNPtimap_l125_m1_e0*
82.7982
71.8971
97.5960
82.1188
21091824420948516435
84.3023
asubramanian-gatkSNPtimap_l125_m2_e0homalt
43.0457
27.4256
100.0000
87.5971
31158243311500
ciseli-customSNPtimap_l100_m2_e1*
86.3257
83.3424
89.5306
71.0284
4124282434117648151336
27.7466
mlin-fermikitSNPtvmap_l125_m1_e0*
61.8003
48.5452
85.0126
58.2565
77758241777113701205
87.9562
gduggal-bwaplatSNP*map_l150_m2_e1het
74.4402
59.5688
99.2072
92.2354
121308233121389727
27.8351
ckim-isaacSNP*map_l150_m2_e0het
74.2562
59.1914
99.6072
80.1907
11917821611918478
17.0213
anovak-vgSNP*map_l100_m2_e0*
84.2603
88.9000
80.0809
71.0026
65754821064960161583566
22.0696
anovak-vgINDELI1_5HG002compoundhet*
40.3635
33.5626
50.6211
62.9728
41478209562454864446
81.0427
ckim-vqsrSNP*map_l100_m0_e0homalt
45.4479
29.4062
100.0000
84.0267
34178203341700
ghariani-varprowlINDELD6_15HG002compoundhet*
10.6907
9.2349
12.6916
39.6150
834819782856965632
98.8764
ciseli-customSNPtimap_l100_m2_e0*
86.2627
83.2663
89.4829
71.0430
4076881934070447841327
27.7383
gduggal-bwavardINDELD6_15HG002compoundhet*
10.9462
9.3899
13.1210
37.7051
848818383255095456
99.0379
gduggal-bwaplatSNP*map_l150_m2_e0het
74.3081
59.3950
99.2206
92.2348
119588175119669427
28.7234
ciseli-customSNP*map_l150_m1_e0*
77.9234
73.3052
83.1626
80.2472
2243881712240445361124
24.7795
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
54.5816
47.5637
64.0290
69.1270
740981681439580876755
83.5291
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.2325
0.0000
0.0000
198154000
ciseli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
50.1585
49.1836
51.1729
59.7079
78928154791975565150
68.1578
gduggal-bwavardINDELD6_15*hetalt
0.0000
0.2691
0.0000
0.0000
228152000
asubramanian-gatkSNPtimap_l125_m1_e0homalt
41.5806
26.2472
100.0000
86.8829
28998146289900
jpowers-varprowlINDELD6_15*hetalt
0.0000
0.3793
0.0000
0.0000
318143000
ghariani-varprowlINDELD6_15*hetalt
0.0000
0.3915
0.0000
0.0000
328142000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.4772
0.0000
0.0000
398134000
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
44.7752
41.0011
49.3146
53.2015
56528133568458425100
87.2989
gduggal-bwavardINDELD6_15HG002compoundhethetalt
0.0000
0.2576
0.0000
0.0000
218130000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.5384
0.0000
0.0000
448129000
ciseli-customSNPtimap_l100_m1_e0*
86.1026
83.0465
89.3922
69.2811
3980581263974247161317
27.9262
gduggal-snapfbINDEL**homalt
94.4791
93.5105
95.4679
58.3050
117049812311709955593925
70.6062
jpowers-varprowlINDELD6_15HG002compoundhethetalt
0.0000
0.3803
0.0000
0.0000
318120000
ghariani-varprowlINDELD6_15HG002compoundhethetalt
0.0000
0.3926
0.0000
0.0000
328119000
gduggal-bwaplatSNP*map_l100_m0_e0het
76.0794
61.7119
99.1672
89.0304
1308681191309811034
30.9091
anovak-vgSNP*map_l100_m1_e0*
84.0947
88.8016
79.8617
69.2688
64295810863514160163537
22.0842
gduggal-bwaplatSNP*map_l150_m1_e0het
73.2588
58.0710
99.2046
91.8292
112178099112259026
28.8889
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
77.7734
73.4547
82.6317
60.7271
2238980913494073442239
30.4875
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
77.7734
73.4547
82.6317
60.7271
2238980913494073442239
30.4875
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.2347
0.0000
0.0000
198076000
anovak-vgINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
55.4286
49.6853
62.6733
53.8178
79738074809348203647
75.6639
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50*
79.8081
77.9624
81.7434
39.7623
285288064487731089310778
98.9443
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.4818
0.0000
0.0000
398056000
gduggal-snapplatSNPtvHG002complexvar*
97.5342
96.7281
98.3538
26.8142
23810180542384503991673
16.8629
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.5435
0.0000
0.0000
448051000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
27.5552
0.0000
0.0000
30608045000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.2482
0.0000
0.0000
208039000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.2482
0.0000
0.0000
208039000
gduggal-bwaplatINDEL*HG002complexvarhet
89.8971
82.6214
98.5779
61.4508
38181803138126550282
51.2727
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.3847
0.0000
0.0000
318028000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3847
0.0000
0.0000
318028000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.3971
0.0000
0.0000
328027000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3971
0.0000
0.0000
328027000
anovak-vgINDELD1_5HG002compoundhet*
38.6407
34.4667
43.9649
65.5035
42178018485961934434
71.5970
gduggal-snapvardSNPtvHG002complexvar*
97.7872
96.7504
98.8464
23.7234
238156799923305727201012
37.2059