PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1201-1250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | homalt | 99.8478 | 99.7466 | 99.9492 | 70.2200 | 3936 | 10 | 3937 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | het | 98.3075 | 97.0055 | 99.6450 | 62.4882 | 6738 | 208 | 6736 | 24 | 4 | 16.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | * | 98.8720 | 98.0022 | 99.7574 | 65.7671 | 10694 | 218 | 10693 | 26 | 6 | 23.0769 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | homalt | 99.6981 | 99.4729 | 99.9244 | 76.2016 | 1321 | 7 | 1321 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.3636 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | het | 97.1210 | 94.9349 | 99.4100 | 64.2688 | 2699 | 144 | 2696 | 16 | 3 | 18.7500 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | * | 97.9546 | 96.3824 | 99.5789 | 69.3400 | 4023 | 151 | 4020 | 17 | 4 | 23.5294 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | homalt | 99.8435 | 99.7530 | 99.9341 | 68.3791 | 6059 | 15 | 6065 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | het | 98.7185 | 97.8205 | 99.6332 | 61.5213 | 10323 | 230 | 10322 | 38 | 5 | 13.1579 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | * | 99.1333 | 98.5291 | 99.7448 | 64.3814 | 16412 | 245 | 16417 | 42 | 9 | 21.4286 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | homalt | 99.8420 | 99.7507 | 99.9334 | 68.3459 | 6002 | 15 | 6003 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | het | 98.7191 | 97.7974 | 99.6584 | 61.3796 | 10212 | 230 | 10211 | 35 | 5 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | * | 99.1334 | 98.5142 | 99.7605 | 64.2909 | 16244 | 245 | 16244 | 39 | 9 | 23.0769 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | homalt | 99.8377 | 99.7440 | 99.9316 | 65.7995 | 5845 | 15 | 5846 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | het | 98.6886 | 97.7286 | 99.6676 | 58.7142 | 9896 | 230 | 9895 | 33 | 5 | 15.1515 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | * | 99.1139 | 98.4703 | 99.7659 | 61.6627 | 15771 | 245 | 15771 | 37 | 9 | 24.3243 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | homalt | 99.7971 | 99.6398 | 99.9548 | 70.1295 | 2213 | 8 | 2213 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8750 | 9 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | het | 97.8147 | 96.1145 | 99.5761 | 59.9585 | 4230 | 171 | 4228 | 18 | 3 | 16.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | homalt | 99.8548 | 99.7850 | 99.9246 | 63.4100 | 9282 | 20 | 9281 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.3226 | 43 | 0 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | het | 98.9548 | 98.3185 | 99.5995 | 57.2767 | 15670 | 268 | 15666 | 63 | 5 | 7.9365 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | * | 99.2889 | 98.8609 | 99.7207 | 59.7908 | 24995 | 288 | 24990 | 70 | 9 | 12.8571 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | homalt | 99.8534 | 99.7829 | 99.9239 | 63.3991 | 9194 | 20 | 9193 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | het | 98.9599 | 98.3013 | 99.6273 | 57.1739 | 15509 | 268 | 15505 | 58 | 5 | 8.6207 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | * | 99.2918 | 98.8495 | 99.7380 | 59.7315 | 24745 | 288 | 24740 | 65 | 9 | 13.8462 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | homalt | 99.8561 | 99.7899 | 99.9225 | 60.9412 | 9024 | 19 | 9023 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.0351 | 41 | 0 | 41 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | het | 98.9516 | 98.2617 | 99.6512 | 54.6439 | 15149 | 268 | 15144 | 53 | 5 | 9.4340 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | * | 99.2885 | 98.8286 | 99.7528 | 57.2287 | 24214 | 287 | 24208 | 60 | 9 | 15.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | homalt | 99.7918 | 99.7140 | 99.8697 | 63.2094 | 3835 | 11 | 3833 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 16 | 0 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | het | 98.3382 | 97.0922 | 99.6165 | 55.2134 | 7012 | 210 | 7013 | 27 | 4 | 14.8148 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | * | 98.8489 | 98.0061 | 99.7063 | 58.4119 | 10863 | 221 | 10862 | 32 | 6 | 18.7500 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.7712 | 99.9233 | 31.1675 | 1308 | 3 | 1302 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6037 | 99.7194 | 99.4884 | 35.8783 | 2132 | 6 | 2139 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6813 | 99.7101 | 99.6525 | 34.1910 | 3440 | 10 | 3441 | 12 | 3 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||