PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85751-85800 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4705 | 97.6021 | 99.3545 | 52.3611 | 2198 | 54 | 2155 | 14 | 7 | 50.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.3065 | 97.4471 | 87.6810 | 67.1193 | 3779 | 99 | 3694 | 519 | 13 | 2.5048 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.1203 | 97.1933 | 82.2855 | 70.9397 | 2424 | 70 | 2369 | 510 | 8 | 1.5686 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.6458 | 97.9754 | 99.3253 | 54.0950 | 1355 | 28 | 1325 | 9 | 5 | 55.5556 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 37.8203 | 79.7927 | 24.7836 | 90.1732 | 308 | 78 | 315 | 956 | 27 | 2.8243 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 31.6999 | 78.9855 | 19.8291 | 89.3462 | 218 | 58 | 232 | 938 | 21 | 2.2388 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.9978 | 81.8182 | 82.1782 | 94.8258 | 90 | 20 | 83 | 18 | 6 | 33.3333 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 60.8435 | 85.3147 | 47.2815 | 88.9072 | 2318 | 399 | 2261 | 2521 | 114 | 4.5220 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 52.6861 | 86.5079 | 37.8773 | 88.9660 | 1526 | 238 | 1506 | 2470 | 92 | 3.7247 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.1125 | 83.1756 | 93.6725 | 88.6078 | 791 | 160 | 755 | 51 | 22 | 43.1373 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 66.6372 | 86.2331 | 54.2983 | 88.7662 | 2042 | 326 | 1977 | 1664 | 92 | 5.5289 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 58.8714 | 87.8468 | 44.2696 | 89.1685 | 1330 | 184 | 1294 | 1629 | 74 | 4.5427 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9064 | 83.4507 | 95.1253 | 86.7650 | 711 | 141 | 683 | 35 | 18 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.8096 | 94.2598 | 73.8399 | 86.2952 | 10181 | 620 | 10009 | 3546 | 141 | 3.9763 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8075 | 94.3048 | 64.7869 | 87.6558 | 6491 | 392 | 6399 | 3478 | 109 | 3.1340 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.1492 | 94.2273 | 98.1512 | 80.5335 | 3689 | 226 | 3610 | 68 | 32 | 47.0588 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 82.8791 | 91.0940 | 76.0233 | 83.7724 | 26154 | 2557 | 25854 | 8154 | 268 | 3.2867 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.0366 | 91.2990 | 99.0933 | 69.4457 | 15498 | 1477 | 15300 | 140 | 72 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.6921 | 93.8506 | 82.2921 | 78.6557 | 9096 | 596 | 8997 | 1936 | 140 | 7.2314 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.9078 | 94.1790 | 75.6567 | 81.6542 | 5873 | 363 | 5818 | 1872 | 118 | 6.3034 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.5819 | 93.2562 | 98.0265 | 65.1478 | 3222 | 233 | 3179 | 64 | 22 | 34.3750 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.5766 | 54.7619 | 24.2105 | 97.0652 | 23 | 19 | 23 | 72 | 1 | 1.3889 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.9524 | 40.7407 | 14.1026 | 96.9614 | 11 | 16 | 11 | 67 | 1 | 1.4925 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 80.0000 | 70.5882 | 97.4627 | 12 | 3 | 12 | 5 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6868 | 98.3466 | 99.0294 | 55.2658 | 16893 | 284 | 16733 | 164 | 41 | 25.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.4953 | 98.4031 | 98.5877 | 57.4464 | 10907 | 177 | 10820 | 155 | 36 | 23.2258 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0804 | 98.3246 | 99.8480 | 50.5717 | 5986 | 102 | 5913 | 9 | 5 | 55.5556 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.1810 | 97.5637 | 87.3613 | 59.2270 | 17740 | 443 | 17557 | 2540 | 107 | 4.2126 | |