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Explore HG002 comparison results
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EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85851-85900 / 86044 show all
ghariani-varprowlSNPtv*hetalt
0.0000
0.0000
0.0000
0871000
ghariani-varprowlSNPtv*homalt
99.6533
99.9547
99.3538
23.4817
37695017137702324521194
48.6949
ghariani-varprowlSNPtvHG002complexvar*
98.9457
99.5507
98.3479
26.3760
24504611062452664120790
19.1748
ghariani-varprowlSNPtvHG002complexvarhet
98.7696
99.5137
98.0366
26.9661
149998733150145300754
1.7958
ghariani-varprowlSNPtvHG002complexvarhetalt
0.0000
0.0000
0.0000
0310000
ghariani-varprowlSNPtvHG002complexvarhomalt
99.3856
99.9338
98.8434
25.4168
9504863951211113736
66.1276
ghariani-varprowlSNPtvHG002compoundhet*
76.9891
85.1395
70.2629
63.5595
75971326772432691134
34.6895
ghariani-varprowlSNPtvHG002compoundhethet
78.1241
90.1776
68.9129
69.5656
42144594336195610
0.5112
ghariani-varprowlSNPtvHG002compoundhethetalt
0.0000
0.0000
0.0000
0862000
ghariani-varprowlSNPtvHG002compoundhethomalt
83.7163
99.8524
72.0698
50.4793
33835338813131124
85.6055
ghariani-varprowlSNPtvdecoy*
0.0000
100.0000
00000
ghariani-varprowlSNPtvdecoyhet
0.0000
100.0000
00000
ghariani-varprowlSNPtvdecoyhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlSNPtvdecoyhomalt
0.0000
100.0000
00000
ghariani-varprowlSNPtvfunc_cds*
99.2142
99.6568
98.7755
38.2266
4356154356545
9.2593
ghariani-varprowlSNPtvfunc_cdshet
99.0291
99.8118
98.2586
43.0471
265252652470
0.0000
ghariani-varprowlSNPtvfunc_cdshetalt
0.0000
0.0000
0.0000
010000
ghariani-varprowlSNPtvfunc_cdshomalt
99.7950
100.0000
99.5909
28.7083
17040170475
71.4286
ghariani-varprowlSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
89.0162
97.8232
81.6639
77.4026
148333149233522
6.5672
ghariani-varprowlSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
85.1516
96.8750
75.9593
78.6419
961319703073
0.9772
ghariani-varprowlSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
97.2067
99.6183
94.9091
73.8841
52225222819
67.8571
ghariani-varprowlSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ghariani-varprowlSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ghariani-varprowlSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.6349
98.9595
92.5264
70.1656
27390288274972221284
12.7870
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.4227
98.4802
90.6863
72.2353
1730126717390178611
0.6159
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
013000
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8554
99.9208
95.8736
65.4859
10089810107435273
62.7586
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.5865
98.1950
77.4326
84.5229
14308263143804191196
4.6767
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
81.6587
97.5693
70.2096
85.8214
89112228977380926
0.6826
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
015000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.3614
99.5206
93.3967
80.5951
5397265403382170
44.5026
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.7049
99.1018
92.5331
67.6378
13241213261078
7.4766
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.0441
98.5965
89.8936
70.5698
84312845950
0.0000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.7680
100.0000
97.5659
60.0486
4810481128
66.6667
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
95.6108
99.3560
92.1377
74.6935
216014216818514
7.5676
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
94.0681
99.1348
89.4942
76.3243
13751213801621
0.6173
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.4998
99.8728
97.1640
70.8797
78517882313
56.5217
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
95.5502
99.5139
91.8902
78.2560
1433714391277
5.5118
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
93.8264
99.4530
88.8023
79.5703
90959121151
0.8696
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.7811
99.8095
97.7737
75.2184
5241527126
50.0000