PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85401-85450 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | * | 96.8978 | 97.3224 | 96.4768 | 75.8806 | 16211 | 446 | 16211 | 592 | 214 | 36.1486 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | het | 96.3919 | 97.9721 | 94.8619 | 74.2875 | 10339 | 214 | 10339 | 560 | 207 | 36.9643 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.9377 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | homalt | 97.8321 | 96.2134 | 99.5062 | 78.2651 | 5844 | 230 | 5844 | 29 | 7 | 24.1379 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | * | 94.8348 | 95.2324 | 94.4405 | 83.5277 | 3975 | 199 | 3975 | 234 | 89 | 38.0342 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | het | 94.5988 | 96.4122 | 92.8523 | 78.6628 | 2741 | 102 | 2741 | 211 | 84 | 39.8104 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | homalt | 95.3524 | 92.6958 | 98.1659 | 89.1785 | 1231 | 97 | 1231 | 23 | 5 | 21.7391 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | * | 96.2193 | 96.5634 | 95.8777 | 77.9802 | 10537 | 375 | 10536 | 453 | 179 | 39.5143 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | het | 95.6989 | 97.3798 | 94.0751 | 75.4297 | 6764 | 182 | 6764 | 426 | 173 | 40.6103 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | homalt | 97.1916 | 95.1597 | 99.3122 | 81.5059 | 3755 | 191 | 3754 | 26 | 6 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | * | 96.3189 | 96.6711 | 95.9692 | 79.3481 | 10977 | 378 | 10976 | 461 | 180 | 39.0456 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | het | 95.8184 | 97.4766 | 94.2156 | 77.2326 | 7069 | 183 | 7069 | 434 | 174 | 40.0922 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | homalt | 97.2621 | 95.2731 | 99.3359 | 82.3744 | 3890 | 193 | 3889 | 26 | 6 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | * | 96.3446 | 96.7049 | 95.9869 | 79.3609 | 11123 | 379 | 11122 | 465 | 180 | 38.7097 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | het | 95.8395 | 97.4959 | 94.2384 | 77.2735 | 7164 | 184 | 7164 | 438 | 174 | 39.7260 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | homalt | 97.2966 | 95.3314 | 99.3444 | 82.3553 | 3941 | 193 | 3940 | 26 | 6 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | * | 93.9650 | 94.6405 | 93.2990 | 94.3329 | 724 | 41 | 724 | 52 | 12 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | het | 93.7015 | 94.9301 | 92.5043 | 90.6200 | 543 | 29 | 543 | 44 | 9 | 20.4545 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | homalt | 94.7644 | 93.7824 | 95.7672 | 97.4314 | 181 | 12 | 181 | 8 | 3 | 37.5000 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | * | 94.8003 | 95.0510 | 94.5509 | 89.8505 | 2516 | 131 | 2516 | 145 | 53 | 36.5517 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | het | 94.3085 | 95.9709 | 92.7027 | 86.6223 | 1715 | 72 | 1715 | 135 | 48 | 35.5556 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | homalt | 95.8509 | 93.1075 | 98.7608 | 93.4160 | 797 | 59 | 797 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | * | 94.8696 | 95.2811 | 94.4616 | 90.2325 | 2746 | 136 | 2746 | 161 | 55 | 34.1615 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | het | 94.4093 | 96.1856 | 92.6975 | 87.4548 | 1866 | 74 | 1866 | 147 | 50 | 34.0136 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | homalt | 95.9430 | 93.3831 | 98.6471 | 93.4664 | 875 | 62 | 875 | 12 | 5 | 41.6667 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | * | 94.8302 | 95.3018 | 94.3633 | 90.2818 | 2779 | 137 | 2779 | 166 | 55 | 33.1325 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | het | 94.3848 | 96.2341 | 92.6053 | 87.5145 | 1891 | 74 | 1891 | 151 | 50 | 33.1126 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | homalt | 95.8740 | 93.3404 | 98.5491 | 93.5115 | 883 | 63 | 883 | 13 | 5 | 38.4615 | |
| gduggal-snapfb | SNP | tv | map_siren | * | 98.2058 | 98.6697 | 97.7461 | 64.5313 | 45319 | 611 | 45320 | 1045 | 278 | 26.6029 | |
| gduggal-snapfb | SNP | tv | map_siren | het | 97.7974 | 98.9374 | 96.6834 | 63.5849 | 28305 | 304 | 28306 | 971 | 266 | 27.3944 | |
| gduggal-snapfb | SNP | tv | map_siren | hetalt | 96.3415 | 97.5309 | 95.1807 | 83.3333 | 79 | 2 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_siren | homalt | 98.9049 | 98.2309 | 99.5884 | 65.8705 | 16935 | 305 | 16935 | 70 | 12 | 17.1429 | |
| gduggal-snapfb | SNP | tv | segdup | * | 98.5144 | 99.4491 | 97.5971 | 92.7173 | 8485 | 47 | 8489 | 209 | 12 | 5.7416 | |
| gduggal-snapfb | SNP | tv | segdup | het | 98.0225 | 99.3191 | 96.7593 | 93.1540 | 5251 | 36 | 5255 | 176 | 3 | 1.7046 | |
| gduggal-snapfb | SNP | tv | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | SNP | tv | segdup | homalt | 99.3840 | 99.6603 | 99.1093 | 91.8109 | 3227 | 11 | 3227 | 29 | 8 | 27.5862 | |
| gduggal-snapfb | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | tech_badpromoters | * | 90.4459 | 98.6111 | 83.5294 | 68.8645 | 71 | 1 | 71 | 14 | 1 | 7.1429 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | het | 85.3333 | 96.9697 | 76.1905 | 70.4225 | 32 | 1 | 32 | 10 | 0 | 0.0000 | |