PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85051-85100 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | homalt | 98.7568 | 97.7231 | 99.8125 | 68.8568 | 5880 | 137 | 5857 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | * | 95.0540 | 97.9288 | 92.3431 | 80.3827 | 16312 | 345 | 16257 | 1348 | 74 | 5.4896 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | het | 93.2098 | 98.3701 | 88.5639 | 83.4663 | 10381 | 172 | 10354 | 1337 | 65 | 4.8616 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | homalt | 98.7179 | 97.6457 | 99.8140 | 68.9260 | 5931 | 143 | 5903 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | * | 90.7711 | 97.7240 | 84.7419 | 86.2817 | 4079 | 95 | 4071 | 733 | 21 | 2.8649 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | het | 87.7034 | 98.1358 | 79.2759 | 87.9471 | 2790 | 53 | 2781 | 727 | 17 | 2.3384 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | homalt | 98.2846 | 97.0633 | 99.5370 | 78.0859 | 1289 | 39 | 1290 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | het | 91.4999 | 98.3732 | 85.5243 | 84.8383 | 6833 | 113 | 6818 | 1154 | 44 | 3.8128 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | homalt | 98.7838 | 97.7952 | 99.7926 | 71.2507 | 3859 | 87 | 3849 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | het | 91.7382 | 98.3591 | 85.9524 | 85.7991 | 7133 | 119 | 7116 | 1163 | 44 | 3.7833 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | homalt | 98.7875 | 97.7957 | 99.7996 | 73.3173 | 3993 | 90 | 3984 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | * | 94.1240 | 97.9830 | 90.5575 | 83.2923 | 11270 | 232 | 11240 | 1172 | 51 | 4.3515 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | het | 91.8305 | 98.3805 | 86.0982 | 85.8449 | 7229 | 119 | 7209 | 1164 | 45 | 3.8660 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | homalt | 98.7655 | 97.7504 | 99.8019 | 73.3170 | 4041 | 93 | 4031 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | * | 83.6982 | 96.2092 | 74.0666 | 94.7166 | 736 | 29 | 734 | 257 | 5 | 1.9455 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | het | 79.9753 | 96.3287 | 68.3686 | 94.9097 | 551 | 21 | 549 | 254 | 3 | 1.1811 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | homalt | 97.1129 | 95.8549 | 98.4043 | 93.6955 | 185 | 8 | 185 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | * | 88.5182 | 97.6199 | 80.9689 | 91.3881 | 2584 | 63 | 2574 | 605 | 16 | 2.6446 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | het | 84.6644 | 98.0974 | 74.4672 | 92.2745 | 1753 | 34 | 1747 | 599 | 12 | 2.0033 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | homalt | 98.1672 | 97.0794 | 99.2797 | 87.2766 | 831 | 25 | 827 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | * | 88.8754 | 97.3629 | 81.7490 | 91.8702 | 2806 | 76 | 2795 | 624 | 17 | 2.7244 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | het | 85.1643 | 97.8866 | 75.3687 | 92.7134 | 1899 | 41 | 1891 | 618 | 13 | 2.1036 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | homalt | 98.0530 | 96.7983 | 99.3407 | 88.0609 | 907 | 30 | 904 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | * | 88.9493 | 97.3937 | 81.8524 | 91.9441 | 2840 | 76 | 2828 | 627 | 17 | 2.7113 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | het | 85.2663 | 97.9135 | 75.5126 | 92.7832 | 1924 | 41 | 1915 | 621 | 13 | 2.0934 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | homalt | 98.0718 | 96.8288 | 99.3471 | 88.1389 | 916 | 30 | 913 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_siren | * | 96.6959 | 97.4309 | 95.9719 | 67.9885 | 44750 | 1180 | 44530 | 1869 | 157 | 8.4002 | |
| gduggal-bwavard | SNP | tv | map_siren | het | 95.7305 | 97.7804 | 93.7647 | 72.5806 | 27974 | 635 | 27865 | 1853 | 145 | 7.8252 | |
| gduggal-bwavard | SNP | tv | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | map_siren | homalt | 98.5863 | 97.3028 | 99.9041 | 54.3761 | 16775 | 465 | 16665 | 16 | 12 | 75.0000 | |
| gduggal-bwavard | SNP | tv | segdup | * | 98.0164 | 97.1871 | 98.8601 | 94.3820 | 8292 | 240 | 8239 | 95 | 34 | 35.7895 | |
| gduggal-bwavard | SNP | tv | segdup | het | 97.8517 | 97.1439 | 98.5698 | 95.5379 | 5136 | 151 | 5100 | 74 | 15 | 20.2703 | |
| gduggal-bwavard | SNP | tv | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | segdup | homalt | 98.3926 | 97.4676 | 99.3354 | 90.2442 | 3156 | 82 | 3139 | 21 | 19 | 90.4762 | |
| gduggal-bwavard | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | tv | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||