PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84751-84800 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | homalt | 99.6784 | 99.5731 | 99.7840 | 89.6709 | 933 | 4 | 924 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | * | 98.7186 | 99.5542 | 97.8969 | 90.7430 | 2903 | 13 | 2886 | 62 | 6 | 9.6774 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | het | 98.2749 | 99.5420 | 97.0396 | 91.1568 | 1956 | 9 | 1934 | 59 | 4 | 6.7797 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | hetalt | 97.4359 | 100.0000 | 95.0000 | 88.0952 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | homalt | 99.6815 | 99.5772 | 99.7861 | 89.7714 | 942 | 4 | 933 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_siren | * | 97.2803 | 99.8215 | 94.8652 | 61.8425 | 45848 | 82 | 45301 | 2452 | 30 | 1.2235 | |
| eyeh-varpipe | SNP | tv | map_siren | het | 95.7583 | 99.7903 | 92.0396 | 63.5402 | 28549 | 60 | 28096 | 2430 | 18 | 0.7407 | |
| eyeh-varpipe | SNP | tv | map_siren | hetalt | 98.7001 | 98.7654 | 98.6348 | 72.7948 | 80 | 1 | 289 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_siren | homalt | 99.8859 | 99.8782 | 99.8937 | 58.0270 | 17219 | 21 | 16916 | 18 | 8 | 44.4444 | |
| eyeh-varpipe | SNP | tv | segdup | * | 97.0429 | 99.8476 | 94.3914 | 91.6933 | 8519 | 13 | 8398 | 499 | 11 | 2.2044 | |
| eyeh-varpipe | SNP | tv | segdup | het | 95.3870 | 99.8298 | 91.3228 | 92.1659 | 5278 | 9 | 5178 | 492 | 4 | 0.8130 | |
| eyeh-varpipe | SNP | tv | segdup | hetalt | 98.8764 | 100.0000 | 97.7778 | 95.6438 | 7 | 0 | 44 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | homalt | 99.8439 | 99.8765 | 99.8114 | 90.5570 | 3234 | 4 | 3176 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9988 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | tv | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9963 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | tech_badpromoters | * | 78.6517 | 100.0000 | 64.8148 | 71.8750 | 72 | 0 | 70 | 38 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | het | 63.4615 | 100.0000 | 46.4789 | 76.6447 | 33 | 0 | 33 | 38 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.7500 | 39 | 0 | 37 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | * | 98.4300 | 98.7008 | 98.1606 | 72.2063 | 10940 | 144 | 10940 | 205 | 38 | 18.5366 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | het | 97.9160 | 98.5600 | 97.2803 | 74.2359 | 7118 | 104 | 7118 | 199 | 34 | 17.0854 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | homalt | 99.3993 | 98.9600 | 99.8426 | 67.1804 | 3806 | 40 | 3806 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | * | 98.8766 | 99.1511 | 98.6037 | 68.5198 | 24293 | 208 | 24293 | 344 | 55 | 15.9884 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | het | 98.4524 | 99.0335 | 97.8781 | 70.7160 | 15268 | 149 | 15268 | 331 | 48 | 14.5015 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 76.3314 | 40 | 1 | 40 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | homalt | 99.6065 | 99.3586 | 99.8555 | 63.7543 | 8985 | 58 | 8985 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | * | 98.8866 | 99.1651 | 98.6097 | 70.4745 | 24824 | 209 | 24824 | 350 | 55 | 15.7143 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | het | 98.4689 | 99.0556 | 97.8891 | 72.5475 | 15628 | 149 | 15628 | 337 | 48 | 14.2433 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 78.0749 | 41 | 1 | 41 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | homalt | 99.6083 | 99.3597 | 99.8582 | 65.9435 | 9155 | 59 | 9155 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | * | 98.8936 | 99.1694 | 98.6194 | 70.5239 | 25073 | 210 | 25073 | 351 | 56 | 15.9544 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | het | 98.4812 | 99.0651 | 97.9041 | 72.6029 | 15789 | 149 | 15789 | 338 | 49 | 14.4970 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 77.6596 | 42 | 1 | 42 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | homalt | 99.6066 | 99.3550 | 99.8595 | 65.9755 | 9242 | 60 | 9242 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | * | 98.0737 | 98.2808 | 97.8675 | 77.6619 | 6517 | 114 | 6517 | 142 | 29 | 20.4225 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | het | 97.4938 | 98.1141 | 96.8813 | 79.0298 | 4318 | 83 | 4318 | 139 | 26 | 18.7050 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.1538 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | homalt | 99.2297 | 98.6042 | 99.8632 | 74.1727 | 2190 | 31 | 2190 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | * | 98.6420 | 98.8699 | 98.4152 | 72.8937 | 15835 | 181 | 15835 | 255 | 50 | 19.6078 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | het | 98.1591 | 98.7359 | 97.5891 | 74.7511 | 9998 | 128 | 9998 | 247 | 44 | 17.8138 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 76.9841 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | homalt | 99.4861 | 99.1126 | 99.8624 | 68.8267 | 5808 | 52 | 5808 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | * | 98.6658 | 98.8902 | 98.4424 | 74.7627 | 16306 | 183 | 16306 | 258 | 51 | 19.7674 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | het | 98.2005 | 98.7742 | 97.6335 | 76.4784 | 10314 | 128 | 10314 | 250 | 45 | 18.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | homalt | 99.4828 | 99.1025 | 99.8660 | 70.9836 | 5963 | 54 | 5963 | 8 | 6 | 75.0000 | |