PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1601-1650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | tech_badpromoters | * | 88.3476 | 84.7134 | 92.3077 | 52.4917 | 133 | 24 | 132 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | het | 86.4516 | 87.0130 | 85.8974 | 57.3770 | 67 | 10 | 67 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | tech_badpromoters | homalt | 90.4110 | 82.5000 | 100.0000 | 44.9153 | 66 | 14 | 65 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | tech_badpromoters | * | 78.6667 | 77.6316 | 79.7297 | 67.6856 | 59 | 17 | 59 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | het | 81.3187 | 94.8718 | 71.1538 | 54.3860 | 37 | 2 | 37 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 58.4906 | 22 | 11 | 22 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | * | 60.1093 | 57.8947 | 62.5000 | 76.8116 | 11 | 8 | 10 | 6 | 1 | 16.6667 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | het | 51.9481 | 62.5000 | 44.4444 | 81.2500 | 5 | 3 | 4 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | homalt | 75.0000 | 66.6667 | 85.7143 | 65.0000 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | * | 10.5263 | 5.8824 | 50.0000 | 85.7143 | 1 | 16 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | het | 18.1818 | 10.0000 | 100.0000 | 88.8889 | 1 | 9 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | tech_badpromoters | * | 90.4459 | 98.6111 | 83.5294 | 68.8645 | 71 | 1 | 71 | 14 | 1 | 7.1429 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | het | 85.3333 | 96.9697 | 76.1905 | 70.4225 | 32 | 1 | 32 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | tech_badpromoters | homalt | 95.1220 | 100.0000 | 90.6977 | 67.1756 | 39 | 0 | 39 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | * | tech_badpromoters | * | 41.1326 | 31.5789 | 58.9744 | 81.6901 | 24 | 52 | 23 | 16 | 1 | 6.2500 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | het | 34.2146 | 28.2051 | 43.4783 | 84.7682 | 11 | 28 | 10 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | tech_badpromoters | homalt | 53.0612 | 39.3939 | 81.2500 | 71.9298 | 13 | 20 | 13 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | het | 66.6667 | 100.0000 | 50.0000 | 55.5556 | 8 | 0 | 6 | 6 | 5 | 83.3333 | |