PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1101-1150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 48.6667 | 80 | 0 | 77 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | tech_badpromoters | het | 72.0379 | 100.0000 | 56.2963 | 72.9459 | 77 | 0 | 76 | 59 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | tech_badpromoters | * | 83.8356 | 100.0000 | 72.1698 | 67.3846 | 157 | 0 | 153 | 59 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 33.3333 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 41.6667 | 6 | 1 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | * | 91.6667 | 84.6154 | 100.0000 | 47.8261 | 11 | 2 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 13 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 8 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | het | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.3333 | 6 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 50.0000 | 9 | 1 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 52.9412 | 15 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | homalt | 90.0000 | 100.0000 | 81.8182 | 26.6667 | 9 | 0 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | * | 89.4737 | 89.4737 | 89.4737 | 42.4242 | 17 | 2 | 17 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | * | tech_badpromoters | homalt | 94.2436 | 96.9697 | 91.6667 | 50.6849 | 32 | 1 | 33 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 77.7778 | 2 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | tech_badpromoters | het | 91.9609 | 87.1795 | 97.2973 | 46.3768 | 34 | 5 | 36 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | * | 91.9970 | 89.4737 | 94.6667 | 86.9110 | 68 | 8 | 71 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 54.6512 | 39 | 0 | 39 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 41.6667 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | * | 98.6301 | 100.0000 | 97.2973 | 49.3151 | 72 | 0 | 72 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||