PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85751-85800 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | * | * | 2.3476 | 1.2075 | 42.0851 | 50.8200 | 77 | 6300 | 1098 | 1511 | 872 | 57.7101 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | het | 3.9257 | 2.0603 | 41.4818 | 51.0283 | 56 | 2662 | 1047 | 1477 | 850 | 57.5491 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4290 | 0.0000 | 0.0000 | 9 | 2089 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | * | homalt | 1.5180 | 0.7687 | 60.0000 | 43.7086 | 12 | 1549 | 51 | 34 | 22 | 64.7059 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | hetalt | 0.0000 | 1.3451 | 0.0000 | 0.0000 | 26 | 1907 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | * | homalt | 4.0460 | 2.0686 | 91.8919 | 77.7108 | 35 | 1657 | 34 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | D1_5 | * | * | 87.8248 | 91.1601 | 84.7249 | 55.7284 | 133771 | 12972 | 160064 | 28858 | 22853 | 79.1912 | |
| gduggal-snapvard | INDEL | D1_5 | * | het | 88.4948 | 98.0268 | 80.6523 | 58.4318 | 85844 | 1728 | 115949 | 27815 | 21843 | 78.5296 | |
| gduggal-snapvard | INDEL | D1_5 | * | hetalt | 0.0000 | 62.9283 | 0.0000 | 0.0000 | 6447 | 3798 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | * | homalt | 90.7791 | 84.7811 | 97.6903 | 44.1687 | 41480 | 7446 | 44115 | 1043 | 1010 | 96.8360 | |
| ghariani-varprowl | SNP | ti | * | * | 99.5372 | 99.8784 | 99.1982 | 22.5770 | 2082957 | 2536 | 2083186 | 16837 | 1291 | 7.6676 | |
| ghariani-varprowl | SNP | ti | * | het | 99.3626 | 99.8721 | 98.8582 | 25.2183 | 1280237 | 1639 | 1280417 | 14789 | 277 | 1.8730 | |
| ghariani-varprowl | SNP | ti | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 582 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | * | homalt | 99.8530 | 99.9608 | 99.7455 | 17.9110 | 802720 | 315 | 802769 | 2048 | 1014 | 49.5117 | |
| ghariani-varprowl | INDEL | I6_15 | * | * | 61.1674 | 55.3640 | 68.3299 | 52.2203 | 13743 | 11080 | 13763 | 6379 | 6287 | 98.5578 | |
| ghariani-varprowl | INDEL | I6_15 | * | het | 73.9358 | 94.0397 | 60.9136 | 54.3281 | 9435 | 598 | 9494 | 6092 | 6035 | 99.0643 | |
| ghariani-varprowl | INDEL | I6_15 | * | hetalt | 0.0000 | 0.5029 | 0.0000 | 0.0000 | 43 | 8508 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | * | homalt | 79.0493 | 68.3603 | 93.7006 | 43.2628 | 4265 | 1974 | 4269 | 287 | 252 | 87.8049 | |
| ghariani-varprowl | INDEL | D6_15 | * | * | 61.5999 | 58.5275 | 65.0128 | 56.9372 | 15271 | 10821 | 15265 | 8215 | 8072 | 98.2593 | |
| ghariani-varprowl | INDEL | D6_15 | * | het | 73.5164 | 97.8175 | 58.8869 | 57.8444 | 11339 | 253 | 11364 | 7934 | 7830 | 98.6892 | |
| ghariani-varprowl | INDEL | D6_15 | * | hetalt | 0.0000 | 0.3915 | 0.0000 | 0.0000 | 32 | 8142 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | * | homalt | 74.2367 | 61.6503 | 93.2807 | 52.1893 | 3900 | 2426 | 3901 | 281 | 242 | 86.1210 | |
| ghariani-varprowl | SNP | * | * | * | 99.3496 | 99.8685 | 98.8361 | 25.2137 | 3050577 | 4016 | 3051086 | 35930 | 2639 | 7.3448 | |
| ghariani-varprowl | SNP | * | * | het | 99.0974 | 99.8581 | 98.3482 | 28.2380 | 1870907 | 2659 | 1871294 | 31430 | 431 | 1.3713 | |
| ghariani-varprowl | SNP | * | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 871 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | * | homalt | 99.7891 | 99.9588 | 99.6200 | 19.7823 | 1179670 | 486 | 1179792 | 4500 | 2208 | 49.0667 | |
| ghariani-varprowl | INDEL | D1_5 | * | * | 89.8931 | 89.1478 | 90.6510 | 61.1738 | 130819 | 15925 | 130678 | 13477 | 11237 | 83.3791 | |
| ghariani-varprowl | INDEL | D1_5 | * | het | 92.9952 | 99.3560 | 87.3999 | 64.6847 | 87009 | 564 | 86983 | 12540 | 10606 | 84.5774 | |
| ghariani-varprowl | INDEL | D1_5 | * | hetalt | 0.0000 | 0.5661 | 0.0000 | 0.0000 | 58 | 10187 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | * | homalt | 93.4710 | 89.4248 | 97.9006 | 50.1151 | 43752 | 5174 | 43695 | 937 | 631 | 67.3426 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | * | 60.9624 | 54.8063 | 68.6764 | 63.4694 | 3495 | 2882 | 3497 | 1595 | 1576 | 98.8088 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | het | 73.3265 | 90.1398 | 61.7994 | 65.3970 | 2450 | 268 | 2459 | 1520 | 1502 | 98.8158 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4766 | 0.0000 | 0.0000 | 10 | 2088 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | * | homalt | 77.5054 | 66.3037 | 93.2615 | 54.3852 | 1035 | 526 | 1038 | 75 | 74 | 98.6667 | |
| ghariani-varprowl | INDEL | I1_5 | * | * | 89.9389 | 88.6296 | 91.2876 | 58.9415 | 133532 | 17131 | 133404 | 12732 | 11050 | 86.7892 | |
| ghariani-varprowl | INDEL | I1_5 | * | het | 92.7410 | 98.8133 | 87.3718 | 65.8570 | 78102 | 938 | 78120 | 11291 | 10122 | 89.6466 | |
| ghariani-varprowl | INDEL | I1_5 | * | hetalt | 0.0000 | 0.7861 | 0.0000 | 0.0000 | 88 | 11107 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | * | homalt | 94.4302 | 91.5834 | 97.4597 | 39.6857 | 55342 | 5086 | 55284 | 1441 | 928 | 64.3997 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | * | 61.7015 | 59.1244 | 64.5135 | 70.3568 | 4011 | 2773 | 4025 | 2214 | 2123 | 95.8898 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | het | 72.5780 | 95.3150 | 58.5993 | 70.3918 | 3011 | 148 | 3029 | 2140 | 2055 | 96.0280 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.2587 | 0.0000 | 0.0000 | 5 | 1928 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | * | homalt | 72.0773 | 58.8061 | 93.0841 | 70.1867 | 995 | 697 | 996 | 74 | 68 | 91.8919 | |
| ghariani-varprowl | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||