PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85101-85150 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | tv | * | * | 99.5705 | 99.3991 | 99.7425 | 27.2376 | 963863 | 5827 | 963776 | 2488 | 84 | 3.3762 | |
| ckim-gatk | SNP | tv | * | het | 99.5973 | 99.6088 | 99.5858 | 30.9441 | 589381 | 2315 | 589308 | 2451 | 61 | 2.4888 | |
| ckim-gatk | SNP | tv | * | hetalt | 98.6111 | 97.8186 | 99.4166 | 53.8999 | 852 | 19 | 852 | 5 | 4 | 80.0000 | |
| ckim-gatk | SNP | tv | * | homalt | 99.5305 | 99.0738 | 99.9914 | 20.3623 | 373630 | 3493 | 373616 | 32 | 19 | 59.3750 | |
| ckim-isaac | INDEL | * | * | * | 95.8099 | 93.7006 | 98.0163 | 48.2658 | 322838 | 21704 | 321857 | 6514 | 4603 | 70.6632 | |
| ckim-isaac | INDEL | * | * | het | 96.5214 | 95.9358 | 97.1142 | 48.5384 | 186243 | 7890 | 184953 | 5496 | 3918 | 71.2882 | |
| ckim-isaac | INDEL | * | * | hetalt | 87.6357 | 79.0308 | 98.3434 | 43.3219 | 19945 | 5292 | 20303 | 342 | 304 | 88.8889 | |
| ckim-isaac | INDEL | * | * | homalt | 96.2069 | 93.1918 | 99.4236 | 48.6128 | 116650 | 8522 | 116601 | 676 | 381 | 56.3609 | |
| ckim-isaac | INDEL | D16_PLUS | * | * | 86.5111 | 80.7488 | 93.1589 | 55.2640 | 5478 | 1306 | 5447 | 400 | 246 | 61.5000 | |
| ckim-isaac | INDEL | D16_PLUS | * | het | 85.3103 | 83.3175 | 87.4007 | 59.5500 | 2632 | 527 | 2310 | 333 | 202 | 60.6607 | |
| ckim-isaac | INDEL | D16_PLUS | * | hetalt | 85.5821 | 76.2545 | 97.5097 | 48.2976 | 1474 | 459 | 1762 | 45 | 38 | 84.4444 | |
| ckim-isaac | INDEL | D16_PLUS | * | homalt | 88.9191 | 81.0875 | 98.4252 | 54.0612 | 1372 | 320 | 1375 | 22 | 6 | 27.2727 | |
| ckim-isaac | INDEL | D1_5 | * | * | 97.5429 | 96.3222 | 98.7949 | 47.4402 | 141348 | 5397 | 141168 | 1722 | 1190 | 69.1057 | |
| ckim-isaac | INDEL | D1_5 | * | het | 97.9869 | 97.6340 | 98.3423 | 46.0249 | 85502 | 2072 | 85013 | 1433 | 986 | 68.8067 | |
| ckim-isaac | INDEL | D1_5 | * | hetalt | 92.0397 | 86.6959 | 98.0855 | 45.9935 | 8882 | 1363 | 9222 | 180 | 168 | 93.3333 | |
| ckim-isaac | INDEL | D1_5 | * | homalt | 97.8426 | 95.9899 | 99.7683 | 50.1114 | 46964 | 1962 | 46933 | 109 | 36 | 33.0275 | |
| ckim-isaac | INDEL | C1_5 | * | * | 0.0000 | 40.0000 | 0.0000 | 0.0000 | 4 | 6 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 3 | 6 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D6_15 | * | * | 91.5791 | 87.9580 | 95.5112 | 39.9809 | 22950 | 3142 | 22852 | 1074 | 785 | 73.0912 | |
| ckim-isaac | INDEL | D6_15 | * | het | 91.7291 | 91.4941 | 91.9653 | 44.9050 | 10606 | 986 | 10084 | 881 | 656 | 74.4608 | |
| ckim-isaac | INDEL | D6_15 | * | hetalt | 90.6237 | 83.9246 | 98.4851 | 33.2460 | 6860 | 1314 | 7281 | 112 | 99 | 88.3929 | |
| ckim-isaac | INDEL | D6_15 | * | homalt | 92.2382 | 86.6899 | 98.5453 | 37.3467 | 5484 | 842 | 5487 | 81 | 30 | 37.0370 | |
| ckim-isaac | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | * | * | 35.4599 | 24.6948 | 62.8636 | 46.3768 | 6130 | 18693 | 6094 | 3600 | 3400 | 94.4444 | |
| ciseli-custom | INDEL | I6_15 | * | het | 44.4423 | 31.4363 | 75.8046 | 53.6729 | 3154 | 6879 | 3227 | 1030 | 925 | 89.8058 | |
| ciseli-custom | INDEL | I6_15 | * | hetalt | 0.0000 | 1.0291 | 0.0000 | 0.0000 | 88 | 8463 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | * | homalt | 49.3008 | 46.2895 | 52.7313 | 38.8345 | 2888 | 3351 | 2867 | 2570 | 2475 | 96.3035 | |
| ckim-dragen | INDEL | * | * | homalt | 99.2636 | 99.8234 | 98.7101 | 59.5235 | 124951 | 221 | 124887 | 1632 | 1607 | 98.4681 | |
| ckim-dragen | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | * | * | 96.5740 | 98.6920 | 94.5451 | 25.2127 | 957014 | 12684 | 954909 | 55095 | 4019 | 7.2947 | |
| ciseli-custom | SNP | tv | * | het | 95.4085 | 98.2395 | 92.7361 | 26.7935 | 581287 | 10417 | 580583 | 45476 | 409 | 0.8994 | |
| ciseli-custom | SNP | tv | * | hetalt | 87.9067 | 82.2044 | 94.4591 | 39.6977 | 716 | 155 | 716 | 42 | 19 | 45.2381 | |
| ciseli-custom | SNP | tv | * | homalt | 98.4608 | 99.4400 | 97.5007 | 22.4395 | 375011 | 2112 | 373610 | 9577 | 3591 | 37.4961 | |
| ckim-dragen | INDEL | * | * | * | 99.1359 | 99.1574 | 99.1143 | 60.3466 | 341639 | 2903 | 341303 | 3050 | 2010 | 65.9016 | |
| ckim-dragen | INDEL | * | * | het | 99.4503 | 99.5962 | 99.3048 | 61.2221 | 193349 | 784 | 192841 | 1350 | 335 | 24.8148 | |
| ckim-dragen | INDEL | * | * | hetalt | 95.9597 | 92.4793 | 99.7124 | 57.0557 | 23339 | 1898 | 23575 | 68 | 68 | 100.0000 | |
| ciseli-custom | SNP | * | * | * | 97.7648 | 98.8356 | 96.7169 | 21.5138 | 3019065 | 35569 | 3006072 | 102041 | 11838 | 11.6012 | |
| ciseli-custom | SNP | * | * | het | 97.1375 | 98.3979 | 95.9090 | 22.9747 | 1843584 | 30017 | 1837235 | 78367 | 939 | 1.1982 | |
| ciseli-custom | SNP | * | * | hetalt | 87.9067 | 82.2044 | 94.4591 | 39.6977 | 716 | 155 | 716 | 42 | 19 | 45.2381 | |
| ciseli-custom | SNP | * | * | homalt | 98.7740 | 99.5427 | 98.0170 | 19.0299 | 1174765 | 5397 | 1168121 | 23632 | 10880 | 46.0393 | |
| ciseli-custom | INDEL | I16_PLUS | * | * | 18.6757 | 11.2906 | 53.9910 | 75.8984 | 720 | 5657 | 717 | 611 | 525 | 85.9247 | |
| ciseli-custom | INDEL | I16_PLUS | * | het | 16.1440 | 9.3451 | 59.2506 | 84.8956 | 254 | 2464 | 253 | 174 | 123 | 70.6897 | |