PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85001-85050 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | * | * | 99.8327 | 99.9538 | 99.7120 | 20.2602 | 2084547 | 964 | 2084816 | 6022 | 378 | 6.2770 | |
| ckim-dragen | SNP | ti | * | het | 99.7466 | 99.9566 | 99.5375 | 22.8315 | 1281335 | 556 | 1281494 | 5955 | 318 | 5.3401 | |
| ckim-dragen | SNP | ti | * | hetalt | 99.1507 | 99.8282 | 98.4823 | 48.3899 | 581 | 1 | 584 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | ti | * | homalt | 99.9710 | 99.9493 | 99.9928 | 15.7227 | 802631 | 407 | 802738 | 58 | 51 | 87.9310 | |
| ciseli-custom | INDEL | C1_5 | * | * | 32.7774 | 40.0000 | 27.7641 | 94.8771 | 4 | 6 | 339 | 882 | 161 | 18.2540 | |
| ciseli-custom | INDEL | C1_5 | * | het | 47.4725 | 44.4444 | 50.9434 | 97.6237 | 4 | 5 | 81 | 78 | 5 | 6.4103 | |
| ciseli-custom | INDEL | C1_5 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 24.2938 | 93.8051 | 0 | 0 | 258 | 804 | 156 | 19.4030 | |
| ciseli-custom | INDEL | * | * | * | 83.5453 | 82.5314 | 84.5844 | 60.0787 | 284352 | 60186 | 284718 | 51890 | 36584 | 70.5030 | |
| ciseli-custom | INDEL | * | * | het | 87.9280 | 88.9146 | 86.9631 | 62.2120 | 172609 | 21520 | 174074 | 26096 | 13945 | 53.4373 | |
| ciseli-custom | INDEL | * | * | hetalt | 0.0000 | 3.4156 | 0.0000 | 0.0000 | 862 | 24375 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | * | homalt | 84.6742 | 88.5829 | 81.0959 | 56.4739 | 110881 | 14291 | 110644 | 25792 | 22639 | 87.7753 | |
| ciseli-custom | INDEL | C6_15 | * | * | 31.2766 | 42.8571 | 24.6231 | 95.7633 | 3 | 4 | 49 | 150 | 44 | 29.3333 | |
| ciseli-custom | INDEL | C6_15 | * | het | 50.0000 | 42.8571 | 60.0000 | 97.5610 | 3 | 4 | 18 | 12 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 18.3432 | 95.1255 | 0 | 0 | 31 | 138 | 44 | 31.8841 | |
| ciseli-custom | INDEL | D16_PLUS | * | * | 59.6718 | 52.7860 | 68.6237 | 57.6195 | 3581 | 3203 | 3565 | 1630 | 1503 | 92.2086 | |
| ciseli-custom | INDEL | D16_PLUS | * | het | 73.2078 | 63.1529 | 87.0708 | 54.9379 | 1995 | 1164 | 2054 | 305 | 262 | 85.9016 | |
| ciseli-custom | INDEL | D16_PLUS | * | hetalt | 0.0000 | 3.3626 | 0.0000 | 0.0000 | 65 | 1868 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | * | homalt | 66.9047 | 89.8936 | 53.2793 | 59.6184 | 1521 | 171 | 1511 | 1325 | 1241 | 93.6604 | |
| ciseli-custom | INDEL | D1_5 | * | * | 87.6336 | 88.4662 | 86.8164 | 62.0849 | 129818 | 16925 | 129564 | 19675 | 10919 | 55.4968 | |
| ciseli-custom | INDEL | D1_5 | * | het | 91.4315 | 94.8260 | 88.2716 | 63.1491 | 83041 | 4531 | 83497 | 11094 | 3726 | 33.5857 | |
| ciseli-custom | INDEL | D1_5 | * | hetalt | 0.0000 | 4.8609 | 0.0000 | 0.0000 | 498 | 9747 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | * | homalt | 89.1477 | 94.5898 | 84.2977 | 60.0900 | 46279 | 2647 | 46067 | 8581 | 7193 | 83.8247 | |
| cchapple-custom | SNP | tv | * | * | 99.7746 | 99.8756 | 99.6738 | 23.8746 | 968484 | 1206 | 967637 | 3167 | 250 | 7.8939 | |
| cchapple-custom | SNP | tv | * | het | 99.6701 | 99.8702 | 99.4708 | 26.9512 | 590928 | 768 | 591553 | 3147 | 233 | 7.4039 | |
| cchapple-custom | SNP | tv | * | hetalt | 0.0000 | 99.6556 | 0.0000 | 0.0000 | 868 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | * | homalt | 99.9396 | 99.8847 | 99.9947 | 18.4432 | 376688 | 435 | 376084 | 20 | 17 | 85.0000 | |
| ciseli-custom | INDEL | D6_15 | * | * | 61.9102 | 60.9636 | 62.8867 | 53.8982 | 15906 | 10185 | 15938 | 9406 | 6255 | 66.5001 | |
| ciseli-custom | INDEL | D6_15 | * | het | 77.1133 | 84.3154 | 71.0447 | 55.4839 | 9773 | 1818 | 10153 | 4138 | 1402 | 33.8811 | |
| ciseli-custom | INDEL | D6_15 | * | hetalt | 0.0000 | 4.0372 | 0.0000 | 0.0000 | 330 | 7844 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | * | homalt | 66.6499 | 91.7325 | 52.3387 | 51.6724 | 5803 | 523 | 5785 | 5268 | 4853 | 92.1222 | |
| ciseli-custom | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 22.6415 | 96.3872 | 0 | 0 | 12 | 41 | 15 | 36.5854 | |
| ciseli-custom | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 22.2222 | 96.6543 | 0 | 0 | 2 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 22.7273 | 96.3272 | 0 | 0 | 10 | 34 | 15 | 44.1176 | |
| ckim-gatk | INDEL | I1_5 | * | * | 99.3427 | 99.1491 | 99.5371 | 59.3239 | 149382 | 1282 | 149430 | 695 | 401 | 57.6978 | |
| ckim-gatk | INDEL | I1_5 | * | het | 99.5633 | 99.6774 | 99.4495 | 61.8943 | 78786 | 255 | 78766 | 436 | 147 | 33.7156 | |
| ckim-gatk | INDEL | I1_5 | * | hetalt | 95.6301 | 91.6749 | 99.9419 | 60.1212 | 10263 | 932 | 10325 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8428 | 99.5825 | 55.2232 | 60333 | 95 | 60339 | 253 | 249 | 98.4190 | |
| ckim-gatk | INDEL | D16_PLUS | * | * | 97.7762 | 97.9953 | 97.5581 | 71.4634 | 6648 | 136 | 6632 | 166 | 106 | 63.8554 | |
| ckim-gatk | INDEL | D16_PLUS | * | het | 97.6163 | 99.3985 | 95.8968 | 79.2687 | 3140 | 19 | 2898 | 124 | 70 | 56.4516 | |
| ckim-gatk | INDEL | D16_PLUS | * | hetalt | 96.6957 | 94.2059 | 99.3207 | 38.1824 | 1821 | 112 | 2047 | 14 | 14 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | * | homalt | 99.0314 | 99.7045 | 98.3673 | 70.9863 | 1687 | 5 | 1687 | 28 | 22 | 78.5714 | |
| ckim-gatk | INDEL | D1_5 | * | * | 99.4755 | 99.4262 | 99.5247 | 61.4945 | 145903 | 842 | 145958 | 697 | 326 | 46.7719 | |
| ckim-gatk | INDEL | D1_5 | * | het | 99.6268 | 99.8162 | 99.4381 | 60.7761 | 87413 | 161 | 87419 | 494 | 126 | 25.5061 | |
| ckim-gatk | INDEL | D1_5 | * | hetalt | 96.5155 | 93.6554 | 99.5558 | 62.7234 | 9595 | 650 | 9637 | 43 | 43 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | * | homalt | 99.8051 | 99.9366 | 99.6739 | 62.4819 | 48895 | 31 | 48902 | 160 | 157 | 98.1250 | |
| ckim-gatk | INDEL | I6_15 | * | * | 97.6383 | 96.8416 | 98.4482 | 52.9059 | 24039 | 784 | 24044 | 379 | 335 | 88.3905 | |
| ckim-gatk | INDEL | I6_15 | * | het | 98.9455 | 98.8239 | 99.0674 | 60.2345 | 9915 | 118 | 9879 | 93 | 52 | 55.9140 | |