PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1751-1800 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D1_5 | * | hetalt | 0.0000 | 0.5661 | 0.0000 | 0.0000 | 58 | 10187 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | * | homalt | 93.4710 | 89.4248 | 97.9006 | 50.1151 | 43752 | 5174 | 43695 | 937 | 631 | 67.3426 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | * | 60.9624 | 54.8063 | 68.6764 | 63.4694 | 3495 | 2882 | 3497 | 1595 | 1576 | 98.8088 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | het | 73.3265 | 90.1398 | 61.7994 | 65.3970 | 2450 | 268 | 2459 | 1520 | 1502 | 98.8158 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4766 | 0.0000 | 0.0000 | 10 | 2088 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | * | homalt | 77.5054 | 66.3037 | 93.2615 | 54.3852 | 1035 | 526 | 1038 | 75 | 74 | 98.6667 | |
| ghariani-varprowl | SNP | * | * | * | 99.3496 | 99.8685 | 98.8361 | 25.2137 | 3050577 | 4016 | 3051086 | 35930 | 2639 | 7.3448 | |
| ghariani-varprowl | SNP | * | * | het | 99.0974 | 99.8581 | 98.3482 | 28.2380 | 1870907 | 2659 | 1871294 | 31430 | 431 | 1.3713 | |
| ghariani-varprowl | SNP | * | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 871 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | * | homalt | 99.7891 | 99.9588 | 99.6200 | 19.7823 | 1179670 | 486 | 1179792 | 4500 | 2208 | 49.0667 | |
| ghariani-varprowl | INDEL | D6_15 | * | * | 61.5999 | 58.5275 | 65.0128 | 56.9372 | 15271 | 10821 | 15265 | 8215 | 8072 | 98.2593 | |
| ghariani-varprowl | INDEL | D6_15 | * | het | 73.5164 | 97.8175 | 58.8869 | 57.8444 | 11339 | 253 | 11364 | 7934 | 7830 | 98.6892 | |
| ghariani-varprowl | INDEL | D6_15 | * | hetalt | 0.0000 | 0.3915 | 0.0000 | 0.0000 | 32 | 8142 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | * | homalt | 74.2367 | 61.6503 | 93.2807 | 52.1893 | 3900 | 2426 | 3901 | 281 | 242 | 86.1210 | |
| ghariani-varprowl | INDEL | I6_15 | * | * | 61.1674 | 55.3640 | 68.3299 | 52.2203 | 13743 | 11080 | 13763 | 6379 | 6287 | 98.5578 | |
| ghariani-varprowl | INDEL | I6_15 | * | het | 73.9358 | 94.0397 | 60.9136 | 54.3281 | 9435 | 598 | 9494 | 6092 | 6035 | 99.0643 | |
| ghariani-varprowl | INDEL | I6_15 | * | hetalt | 0.0000 | 0.5029 | 0.0000 | 0.0000 | 43 | 8508 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | * | homalt | 79.0493 | 68.3603 | 93.7006 | 43.2628 | 4265 | 1974 | 4269 | 287 | 252 | 87.8049 | |
| ghariani-varprowl | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9798 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9850 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9347 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9531 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.9494 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||