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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 37 38 39 40 41 42 43 44 45 ... 1720 1721 » 2001-2050 / 86044 show all
jlack-gatk	INDEL	I1_5	HG002complexvar	*	99.5214	99.3556	99.6877	57.0609	33148	215	33197	104	72	69.2308
hfeng-pmm3	INDEL	I1_5	HG002complexvar	*	99.5912	99.2956	99.8886	56.4158	33128	235	33172	37	24	64.8649
hfeng-pmm1	INDEL	I1_5	HG002complexvar	*	99.5778	99.2956	99.8615	56.6148	33128	235	33171	46	29	63.0435
hfeng-pmm2	INDEL	I1_5	HG002complexvar	*	99.5522	99.2597	99.8464	56.6743	33116	247	33159	51	38	74.5098
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	89.1102	86.0761	92.3660	60.6253	26236	4244	33152	2740	2400	87.5912
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.1102	86.0761	92.3660	60.6253	26236	4244	33152	2740	2400	87.5912
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6452	99.7262	99.5644	75.3068	33145	91	33139	145	104	71.7241
bgallagher-sentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6226	99.6991	99.5463	74.7408	33136	100	33130	151	120	79.4702
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6271	99.6871	99.5672	75.3638	33132	104	33126	144	110	76.3889
mlin-fermikit	SNP	tv	map_siren	*	81.3085	72.1446	93.1393	50.3116	33136	12794	33125	2440	2002	82.0492
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2133	99.5848	98.8446	73.6714	33098	138	33109	387	353	91.2145
ckim-dragen	INDEL	I1_5	HG002complexvar	*	99.5809	99.4065	99.7559	56.6825	33165	198	33105	81	67	82.7160
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5983	99.6119	99.5848	74.9525	33107	129	33101	138	106	76.8116
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
rpoplin-dv42	INDEL	I1_5	HG002complexvar	*	99.3509	99.0558	99.6477	56.5141	33048	315	33091	117	105	89.7436
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6778	99.6209	99.7347	74.4322	33110	126	33088	88	54	61.3636
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5967	99.5697	99.6236	75.3470	33093	143	33087	125	100	80.0000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.9013	96.7415	99.0893	45.1717	12113	408	33076	304	254	83.5526
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6490	99.5246	99.7737	73.4430	33078	158	33071	75	56	74.6667
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5319	99.4945	99.5693	75.4597	33068	168	33062	143	107	74.8252
jli-custom	INDEL	I1_5	HG002complexvar	*	99.4264	98.9689	99.8882	55.8919	33019	344	33052	37	27	72.9730
jmaeng-gatk	INDEL	I1_5	HG002complexvar	*	99.3649	98.9270	99.8067	56.9963	33005	358	33051	64	46	71.8750
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	85.4037	81.6845	89.4777	43.9514	29890	6702	33045	3886	2450	63.0468
ckim-vqsr	INDEL	I1_5	HG002complexvar	*	99.3737	98.9030	99.8489	56.8918	32997	366	33042	50	41	82.0000
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2219	99.3862	99.0582	74.4553	33032	204	33027	314	203	64.6497
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	*	99.3540	98.8640	99.8488	56.1047	32984	379	33026	50	41	82.0000
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	54.3999	51.2849	57.9178	44.7526	19438	18464	33023	23994	20921	87.1926
asubramanian-gatk	SNP	*	map_l100_m2_e1	*	61.2013	44.1254	99.8365	85.2564	32978	41759	32972	54	14	25.9259
asubramanian-gatk	INDEL	I1_5	HG002complexvar	*	99.2344	98.6572	99.8183	57.3625	32915	448	32967	60	50	83.3333
gduggal-snapplat	INDEL	*	HG002complexvar	het	73.0648	65.5393	82.5428	64.5149	30287	15925	32942	6967	459	6.5882
ckim-isaac	SNP	ti	map_l100_m2_e0	*	80.3204	67.1841	99.8422	64.2807	32894	16067	32898	52	10	19.2308
ghariani-varprowl	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	85.9332	98.8085	76.0265	77.4229	32840	396	32867	10364	9929	95.8028
egarrison-hhga	INDEL	I1_5	HG002complexvar	*	98.9362	98.5823	99.2928	54.0549	32890	473	32852	234	120	51.2821
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.1071	97.0183	99.2207	69.5547	32245	991	32847	258	171	66.2791
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1330	98.7273	99.5420	75.3696	32813	423	32819	151	102	67.5497
ndellapenna-hhga	INDEL	I1_5	HG002complexvar	*	98.8448	98.3844	99.3095	53.7677	32824	539	32792	228	116	50.8772
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1951	98.6340	99.7626	72.6726	32782	454	32775	78	58	74.3590
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3353	99.0372	99.6352	71.5761	32916	320	32773	120	43	35.8333
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1963	98.5919	99.8081	71.9245	32768	468	32762	63	44	69.8413
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	84.6909	92.5107	78.0901	74.9769	5645	457	32751	9189	7904	86.0159
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1552	98.5347	99.7836	72.0617	32749	487	32742	71	45	63.3803
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0441	98.5197	99.5742	73.0561	32744	492	32737	140	116	82.8571
qzeng-custom	SNP	*	map_l125_m1_e0	*	83.4865	72.9742	97.5374	82.2302	33077	12250	32716	826	701	84.8668
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	90.8245	87.6365	94.2532	40.4574	33216	4686	32687	1993	1737	87.1550
hfeng-pmm3	SNP	*	map_l100_m0_e0	*	99.4850	99.4123	99.5578	68.0774	32648	193	32644	145	21	14.4828
hfeng-pmm2	SNP	*	map_l100_m0_e0	*	99.2701	99.4001	99.1404	70.5461	32644	197	32640	283	34	12.0141
qzeng-custom	SNP	ti	map_siren	homalt	93.0187	87.2719	99.5758	47.6263	33090	4826	32626	139	121	87.0504
bgallagher-sentieon	SNP	*	map_l100_m0_e0	*	99.1340	99.3545	98.9146	69.7273	32629	212	32625	358	60	16.7598
dgrover-gatk	INDEL	D1_5	HG002complexvar	*	99.6498	99.5323	99.7675	58.6672	32562	153	32617	76	66	86.8421
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	*	99.6177	99.4956	99.7400	58.4446	32550	165	32605	85	76	89.4118

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