PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1501-1550 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | map_l125_m2_e0 | * | 99.3766 | 99.4649 | 99.2885 | 73.4867 | 46473 | 250 | 46467 | 333 | 39 | 11.7117 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | * | 99.2735 | 99.4499 | 99.0978 | 72.9518 | 46466 | 257 | 46460 | 423 | 70 | 16.5485 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e1 | het | 98.7046 | 99.0277 | 98.3837 | 71.3332 | 46442 | 456 | 46444 | 763 | 144 | 18.8729 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | het | 99.3694 | 98.9552 | 99.7871 | 65.4429 | 46408 | 490 | 46409 | 99 | 31 | 31.3131 | |
| dgrover-gatk | SNP | * | map_l125_m2_e0 | * | 99.3279 | 99.3194 | 99.3363 | 74.2156 | 46405 | 318 | 46399 | 310 | 69 | 22.2581 | |
| hfeng-pmm1 | SNP | * | map_l125_m2_e0 | * | 99.4680 | 99.2509 | 99.6861 | 70.6559 | 46373 | 350 | 46367 | 146 | 41 | 28.0822 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e0 | * | 99.1550 | 99.2145 | 99.0956 | 71.3320 | 46356 | 367 | 46350 | 423 | 15 | 3.5461 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | * | 98.9981 | 98.1759 | 99.8341 | 61.4299 | 46341 | 861 | 46349 | 77 | 15 | 19.4805 | |
| ckim-dragen | SNP | * | map_l125_m2_e0 | * | 98.4092 | 99.0947 | 97.7332 | 74.8209 | 46300 | 423 | 46306 | 1074 | 120 | 11.1732 | |
| jli-custom | SNP | * | map_l125_m2_e0 | * | 99.3286 | 99.1032 | 99.5549 | 68.8474 | 46304 | 419 | 46301 | 207 | 67 | 32.3671 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | * | 99.4490 | 99.0882 | 99.8124 | 70.5171 | 46297 | 426 | 46297 | 87 | 41 | 47.1264 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | * | 99.2517 | 99.0733 | 99.4307 | 70.7955 | 46290 | 433 | 46284 | 265 | 170 | 64.1509 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | * | 95.7724 | 94.3751 | 97.2116 | 76.1299 | 46207 | 2754 | 46228 | 1326 | 687 | 51.8100 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | * | 98.8404 | 98.8764 | 98.8045 | 74.2723 | 46198 | 525 | 46198 | 559 | 136 | 24.3292 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | * | 96.1886 | 98.8828 | 93.6372 | 80.3034 | 46201 | 522 | 46195 | 3139 | 239 | 7.6139 | |
| jmaeng-gatk | SNP | * | map_siren | homalt | 91.1261 | 83.7262 | 99.9610 | 54.5250 | 46180 | 8976 | 46171 | 18 | 18 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e0 | het | 99.2145 | 99.5129 | 98.9179 | 70.0977 | 46173 | 226 | 46162 | 505 | 63 | 12.4752 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | het | 99.0834 | 98.4264 | 99.7493 | 64.4229 | 46160 | 738 | 46162 | 116 | 41 | 35.3448 | |
| dgrover-gatk | SNP | * | map_l100_m2_e0 | het | 99.3701 | 99.4698 | 99.2707 | 71.6313 | 46153 | 246 | 46142 | 339 | 63 | 18.5841 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | * | 97.9545 | 98.7522 | 97.1696 | 76.9826 | 46140 | 583 | 46140 | 1344 | 275 | 20.4613 | |
| gduggal-bwavard | SNP | ti | map_l100_m1_e0 | * | 96.6358 | 97.1730 | 96.1044 | 73.3213 | 46576 | 1355 | 46133 | 1870 | 152 | 8.1283 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | het | 99.5523 | 99.4461 | 99.6587 | 66.2016 | 46142 | 257 | 46131 | 158 | 14 | 8.8608 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | het | 99.0006 | 98.3219 | 99.6887 | 57.1362 | 46111 | 787 | 46109 | 144 | 12 | 8.3333 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | het | 99.3150 | 99.3793 | 99.2508 | 69.6789 | 46111 | 288 | 46100 | 348 | 28 | 8.0460 | |
| ckim-gatk | SNP | * | map_siren | homalt | 91.0516 | 83.5974 | 99.9653 | 55.1658 | 46109 | 9047 | 46100 | 16 | 14 | 87.5000 | |
| ciseli-custom | INDEL | D1_5 | * | homalt | 89.1477 | 94.5898 | 84.2977 | 60.0900 | 46279 | 2647 | 46067 | 8581 | 7193 | 83.8247 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | * | 99.1850 | 98.5896 | 99.7877 | 69.4898 | 46064 | 659 | 46064 | 98 | 49 | 50.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | het | 97.3145 | 98.2025 | 96.4425 | 69.0883 | 46055 | 843 | 46059 | 1699 | 659 | 38.7875 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | het | 95.7132 | 99.2694 | 92.4029 | 79.6895 | 46060 | 339 | 46049 | 3786 | 266 | 7.0259 | |
| ckim-dragen | SNP | * | map_l100_m2_e0 | het | 98.0933 | 99.2263 | 96.9859 | 73.8971 | 46040 | 359 | 46046 | 1431 | 119 | 8.3159 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | het | 99.0893 | 99.2047 | 98.9741 | 68.2725 | 46030 | 369 | 46019 | 477 | 7 | 1.4675 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | * | 99.1232 | 98.4718 | 99.7831 | 64.7024 | 46009 | 714 | 46011 | 100 | 28 | 28.0000 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | het | 97.8332 | 99.1530 | 96.5480 | 75.0125 | 46006 | 393 | 46009 | 1645 | 255 | 15.5015 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | het | 99.2759 | 99.1530 | 99.3992 | 65.9847 | 46006 | 393 | 45994 | 278 | 141 | 50.7194 | |
| jli-custom | SNP | * | map_l100_m2_e0 | het | 99.2823 | 99.1336 | 99.4314 | 64.8428 | 45997 | 402 | 45994 | 263 | 62 | 23.5741 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | het | 98.8788 | 98.0660 | 99.7052 | 53.2399 | 45991 | 907 | 45990 | 136 | 8 | 5.8824 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | het | 99.4228 | 99.1250 | 99.7224 | 65.3363 | 45993 | 406 | 45982 | 128 | 32 | 25.0000 | |
| cchapple-custom | SNP | * | map_l100_m2_e1 | het | 96.8714 | 97.9018 | 95.8624 | 74.0033 | 45914 | 984 | 45967 | 1984 | 408 | 20.5645 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | het | 98.6971 | 99.0172 | 98.3791 | 71.2956 | 45943 | 456 | 45945 | 757 | 143 | 18.8904 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | het | 99.3648 | 98.9461 | 99.7870 | 65.4283 | 45910 | 489 | 45911 | 98 | 31 | 31.6327 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | * | 97.5993 | 97.1950 | 98.0069 | 76.8922 | 45878 | 1324 | 45878 | 933 | 285 | 30.5466 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | * | 98.9920 | 98.1594 | 99.8389 | 61.3454 | 45863 | 860 | 45865 | 74 | 15 | 20.2703 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | * | 96.9542 | 97.1463 | 96.7628 | 75.1056 | 45855 | 1347 | 45852 | 1534 | 347 | 22.6206 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | * | 96.9532 | 97.0065 | 96.9000 | 74.6410 | 45789 | 1413 | 45793 | 1465 | 623 | 42.5256 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6687 | 95.2332 | 92.1549 | 68.7890 | 45970 | 2301 | 45789 | 3898 | 3775 | 96.8445 | |
| hfeng-pmm3 | SNP | tv | map_siren | * | 99.7604 | 99.7104 | 99.8104 | 56.7354 | 45797 | 133 | 45789 | 87 | 15 | 17.2414 | |
| bgallagher-sentieon | SNP | tv | map_siren | * | 99.5565 | 99.7083 | 99.4051 | 58.5993 | 45796 | 134 | 45788 | 274 | 36 | 13.1387 | |
| hfeng-pmm2 | SNP | tv | map_siren | * | 99.6626 | 99.6995 | 99.6257 | 59.0414 | 45792 | 138 | 45784 | 172 | 23 | 13.3721 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 89.7995 | 82.2060 | 98.9387 | 71.6625 | 45732 | 9899 | 45775 | 491 | 144 | 29.3279 | |
| anovak-vg | INDEL | D1_5 | * | homalt | 93.1579 | 92.5438 | 93.7802 | 58.8390 | 45278 | 3648 | 45761 | 3035 | 2387 | 78.6491 | |