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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
1251-1300 / 86044 show all
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8169
99.8526
99.7812
60.4097
55549825563112239
31.9672
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4715
99.6836
99.2603
56.9862
554551765555641457
13.7681
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6082
99.8778
99.3401
60.0690
55563685555236930
8.1301
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6743
99.8742
99.4753
60.5238
55561705555029327
9.2150
rpoplin-dv42SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8633
99.8472
99.8795
59.6020
5554685555306738
56.7164
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5883
99.8077
99.3700
59.7371
555241075552035227
7.6705
jlack-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1906
99.8023
98.5863
61.2684
555211105551079646
5.7789
gduggal-snapfbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.4732
99.0329
79.9484
69.7226
550935385547713914538
3.8666
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5960
99.7232
99.4692
61.2535
554771545546629629
9.7973
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5600
99.5848
99.5352
55.2358
554002315546325919
7.3359
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6504
99.6818
99.6191
61.4842
554541775544321223
10.8491
ltrigg-rtg2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4820
99.5452
99.4189
54.5520
553782535542832426
8.0247
jpowers-varprowlINDELI1_5*homalt
94.7762
91.6661
98.1046
39.3198
553925036553321069948
88.6810
gduggal-bwafbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.5852
99.2612
97.9184
64.7490
55220411553201176260
22.1088
ghariani-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.4136
99.0024
92.0759
67.6063
55076555552874758565
11.8747
ghariani-varprowlINDELI1_5*homalt
94.4302
91.5834
97.4597
39.6857
553425086552841441928
64.3997
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4494
99.3637
99.5353
61.3550
552773545526625827
10.4651
qzeng-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0366
99.3834
98.6923
64.9734
5528834355243732105
14.3443
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1202
97.0035
95.2529
60.1354
5396416675524027531338
48.6015
egarrison-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4287
99.1605
99.6983
57.8100
551644675518016788
52.6946
jpowers-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8391
98.7777
96.9182
66.3842
54951680551301753575
32.8009
ndellapenna-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3149
99.0149
99.6167
57.6636
5508354855098212134
63.2075
hfeng-pmm2SNP*map_sirenhomalt
99.9075
99.9003
99.9148
53.4382
5510155550924729
61.7021
hfeng-pmm1SNP*map_sirenhomalt
99.8994
99.8803
99.9184
53.4037
5509066550844526
57.7778
hfeng-pmm3SNP*map_sirenhomalt
99.9057
99.8840
99.9274
53.2388
5509264550834022
55.0000
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4718
99.0131
99.9347
60.3688
55082549550723619
52.7778
asubramanian-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6773
98.9323
98.4237
61.2579
550375945507288234
3.8549
hfeng-pmm3SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4564
98.9898
99.9274
58.6346
55069562550604015
37.5000
raldana-dualsentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3531
98.9700
99.7391
58.7473
550585735504814422
15.2778
raldana-dualsentieonSNP*map_sirenhomalt
99.8920
99.8187
99.9655
49.6673
55056100550471919
100.0000
hfeng-pmm1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4409
98.9502
99.9364
58.3709
55047584550373512
34.2857
egarrison-hhgaSNP*map_sirenhomalt
99.8639
99.7770
99.9510
53.4112
55033123550332724
88.8889
ltrigg-rtg1SNP*map_sirenhomalt
99.8648
99.7933
99.9364
52.2080
55042114550313531
88.5714
bgallagher-sentieonSNP*map_sirenhomalt
99.8557
99.7643
99.9473
50.0857
55026130550172925
86.2069
jli-customSNP*map_sirenhomalt
99.8512
99.7462
99.9564
49.8643
55016140550102424
100.0000
ltrigg-rtg2SNP*map_sirenhomalt
99.8557
99.7571
99.9546
50.5157
55022134550102522
88.0000
ndellapenna-hhgaSNP*map_sirenhomalt
99.8258
99.7135
99.9382
52.6378
54998158549993430
88.2353
hfeng-pmm2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3785
98.8765
99.8856
58.5898
55006625549966310
15.8730
rpoplin-dv42SNP*map_sirenhomalt
99.7831
99.6882
99.8783
53.6066
54984172549836763
94.0299
dgrover-gatkSNP*map_sirenhomalt
99.8121
99.6791
99.9455
50.4067
54979177549703026
86.6667
ckim-dragenSNP*map_sirenhomalt
99.7220
99.5214
99.9236
48.9049
54892264548964238
90.4762
astatham-gatkSNP*map_sirenhomalt
99.7411
99.5377
99.9454
50.1425
54901255548923026
86.6667
gduggal-bwafbSNP*map_sirenhomalt
99.7102
99.5014
99.9199
54.2074
54881275548814425
56.8182
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.4077
96.8613
95.9584
55.0491
273738875484623101901
82.2944
jpowers-varprowlSNP*map_sirenhomalt
99.5443
99.4144
99.6746
55.8957
5483332354834179129
72.0670
ghariani-varprowlSNP*map_sirenhomalt
99.5027
99.3944
99.6112
54.3239
5482233454823214127
59.3458
jlack-gatkSNP*map_sirenhomalt
99.6008
99.2857
99.9179
50.5286
54762394547534530
66.6667
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3184
96.2571
98.4034
52.4797
41713162254546885782
88.3616