PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1151-1200 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | * | * | * | 99.9296 | 99.9673 | 99.8919 | 18.9151 | 3053620 | 999 | 3053471 | 3303 | 195 | 5.9037 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | het | 19.8395 | 43.8824 | 12.8171 | 74.6754 | 373 | 477 | 485 | 3299 | 129 | 3.9103 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.9138 | 82.9573 | 84.8926 | 46.2434 | 18458 | 3792 | 18538 | 3299 | 3068 | 92.9979 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.7746 | 98.8928 | 90.9856 | 70.5872 | 32868 | 368 | 33288 | 3298 | 3156 | 95.6944 | |
| gduggal-bwavard | SNP | * | HG002complexvar | het | 98.2730 | 97.3044 | 99.2610 | 20.1947 | 452952 | 12548 | 441659 | 3288 | 2162 | 65.7543 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | het | 95.2191 | 97.5462 | 93.0004 | 78.0483 | 44246 | 1113 | 43686 | 3288 | 213 | 6.4781 | |
| jlack-gatk | INDEL | * | * | het | 98.8624 | 99.4076 | 98.3232 | 61.7242 | 192983 | 1150 | 192623 | 3285 | 1088 | 33.1202 | |
| qzeng-custom | SNP | tv | * | * | 99.4379 | 99.2180 | 99.6588 | 26.4392 | 962115 | 7583 | 958619 | 3282 | 549 | 16.7276 | |
| anovak-vg | SNP | ti | HG002compoundhet | * | 77.8164 | 75.3290 | 80.4737 | 38.3806 | 13166 | 4312 | 13522 | 3281 | 2578 | 78.5736 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | het | 72.7287 | 66.8410 | 79.7539 | 83.7508 | 12911 | 6405 | 12897 | 3274 | 108 | 3.2987 | |
| eyeh-varpipe | SNP | * | map_siren | * | 98.7590 | 99.8051 | 97.7347 | 59.1101 | 145943 | 285 | 141168 | 3272 | 81 | 2.4756 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 57.4173 | 46.1301 | 76.0173 | 74.8627 | 8380 | 9786 | 10368 | 3271 | 2260 | 69.0920 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 57.4173 | 46.1301 | 76.0173 | 74.8627 | 8380 | 9786 | 10368 | 3271 | 2260 | 69.0920 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | * | 76.9891 | 85.1395 | 70.2629 | 63.5595 | 7597 | 1326 | 7724 | 3269 | 1134 | 34.6895 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 75.2906 | 65.9666 | 87.6843 | 78.0956 | 20292 | 10469 | 23253 | 3266 | 1977 | 60.5328 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 65.3789 | 96.5057 | 49.4344 | 75.2664 | 3038 | 110 | 3190 | 3263 | 93 | 2.8501 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 67.3074 | 57.8428 | 80.4752 | 45.6223 | 4864 | 3545 | 13445 | 3262 | 3175 | 97.3329 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 47.1342 | 38.1966 | 61.5321 | 37.8247 | 2639 | 4270 | 5213 | 3259 | 2660 | 81.6201 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 82.8608 | 81.8751 | 83.8705 | 37.8607 | 16863 | 3733 | 16941 | 3258 | 3048 | 93.5543 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 49.2492 | 43.6456 | 56.5037 | 39.7780 | 4128 | 5330 | 4231 | 3257 | 2430 | 74.6085 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 87.0890 | 98.8717 | 77.8157 | 57.1312 | 11304 | 129 | 11407 | 3252 | 116 | 3.5670 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | het | 83.3126 | 78.8921 | 88.2578 | 75.0429 | 24425 | 6535 | 24398 | 3246 | 86 | 2.6494 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4659 | 95.5595 | 91.4621 | 42.7719 | 11965 | 556 | 34730 | 3242 | 2192 | 67.6126 | |
| mlin-fermikit | SNP | * | map_l125_m1_e0 | * | 62.6787 | 48.9002 | 87.2681 | 57.2976 | 22165 | 23162 | 22160 | 3233 | 2859 | 88.4318 | |
| bgallagher-sentieon | SNP | * | * | het | 99.8943 | 99.9607 | 99.8280 | 19.9469 | 1872851 | 736 | 1872726 | 3227 | 129 | 3.9975 | |
| ciseli-custom | SNP | ti | map_l100_m2_e0 | het | 83.2254 | 78.7865 | 88.1944 | 75.0570 | 24126 | 6496 | 24100 | 3226 | 86 | 2.6658 | |
| eyeh-varpipe | SNP | * | map_siren | het | 98.0835 | 99.7637 | 96.4589 | 61.2396 | 90776 | 215 | 87713 | 3220 | 51 | 1.5839 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.1270 | 87.3774 | 95.2128 | 60.8815 | 57102 | 8249 | 63963 | 3216 | 2822 | 87.7488 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.1270 | 87.3774 | 95.2128 | 60.8815 | 57102 | 8249 | 63963 | 3216 | 2822 | 87.7488 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 67.2347 | 77.6447 | 59.2860 | 62.9451 | 4345 | 1251 | 4683 | 3216 | 1125 | 34.9813 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 77.4574 | 91.9436 | 66.9147 | 52.7787 | 3458 | 303 | 6476 | 3202 | 3147 | 98.2823 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 77.4574 | 91.9436 | 66.9147 | 52.7787 | 3458 | 303 | 6476 | 3202 | 3147 | 98.2823 | |
| mlin-fermikit | INDEL | I1_5 | * | * | 96.5813 | 95.3758 | 97.8177 | 52.8217 | 143697 | 6967 | 143523 | 3202 | 3142 | 98.1262 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 69.6749 | 94.4284 | 55.2038 | 82.9047 | 3915 | 231 | 3941 | 3198 | 130 | 4.0650 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 54.8494 | 87.1622 | 40.0150 | 81.6424 | 2064 | 304 | 2128 | 3190 | 200 | 6.2696 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 83.6639 | 97.9752 | 73.0007 | 49.9045 | 8226 | 170 | 8617 | 3187 | 3103 | 97.3643 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.7373 | 98.5222 | 50.4586 | 77.9321 | 3200 | 48 | 3246 | 3187 | 55 | 1.7258 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 38.3331 | 34.4623 | 43.1834 | 76.0195 | 2381 | 4528 | 2420 | 3184 | 342 | 10.7412 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | het | 53.2922 | 85.5324 | 38.7035 | 48.7795 | 1478 | 250 | 2006 | 3177 | 3125 | 98.3632 | |
| ciseli-custom | SNP | ti | map_l100_m1_e0 | het | 83.0208 | 78.5018 | 88.0918 | 73.6464 | 23505 | 6437 | 23480 | 3174 | 86 | 2.7095 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.5807 | 94.0681 | 95.0990 | 73.7052 | 60609 | 3822 | 61530 | 3171 | 1742 | 54.9354 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | homalt | 27.3298 | 63.4111 | 17.4185 | 67.5742 | 435 | 251 | 668 | 3167 | 2730 | 86.2015 | |
| cchapple-custom | SNP | tv | * | * | 99.7746 | 99.8756 | 99.6738 | 23.8746 | 968484 | 1206 | 967637 | 3167 | 250 | 7.8939 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 50.6371 | 40.3001 | 68.1066 | 40.7912 | 2310 | 3422 | 6748 | 3160 | 2890 | 91.4557 | |
| eyeh-varpipe | INDEL | I1_5 | HG002compoundhet | homalt | 14.0848 | 94.2249 | 7.6112 | 66.1111 | 310 | 19 | 260 | 3156 | 3150 | 99.8099 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 61.4979 | 50.4415 | 78.7620 | 33.7498 | 3485 | 3424 | 11693 | 3153 | 3094 | 98.1288 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | * | 96.2112 | 98.8920 | 93.6720 | 80.3444 | 46679 | 523 | 46673 | 3153 | 240 | 7.6118 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.1732 | 97.9957 | 70.7498 | 40.7293 | 7236 | 148 | 7624 | 3152 | 3088 | 97.9695 | |
| ckim-gatk | SNP | ti | * | * | 99.6817 | 99.5154 | 99.8485 | 21.6609 | 2075404 | 10107 | 2075345 | 3148 | 170 | 5.4003 | |
| cchapple-custom | SNP | tv | * | het | 99.6701 | 99.8702 | 99.4708 | 26.9512 | 590928 | 768 | 591553 | 3147 | 233 | 7.4039 | |