PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
901-950 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | HG002complexvar | het | 97.7415 | 96.8929 | 98.6052 | 20.9330 | 304985 | 9780 | 300448 | 4250 | 1602 | 37.6941 | |
| ltrigg-rtg2 | SNP | * | * | het | 99.8157 | 99.8572 | 99.7742 | 16.9842 | 1870922 | 2676 | 1871158 | 4235 | 135 | 3.1877 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | * | 48.1810 | 42.2143 | 56.1120 | 77.8637 | 5216 | 7140 | 5412 | 4233 | 851 | 20.1039 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.8352 | 87.2704 | 88.4074 | 67.9175 | 31934 | 4658 | 32274 | 4232 | 3738 | 88.3270 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 79.1914 | 73.9716 | 85.2037 | 51.7929 | 13181 | 4638 | 24318 | 4223 | 1294 | 30.6417 | |
| gduggal-bwavard | SNP | * | map_siren | * | 97.0294 | 96.9773 | 97.0815 | 65.0881 | 141808 | 4420 | 139841 | 4204 | 408 | 9.7050 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 51.7623 | 87.4465 | 36.7612 | 44.5578 | 2452 | 352 | 2438 | 4194 | 3961 | 94.4444 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.5865 | 98.1950 | 77.4326 | 84.5229 | 14308 | 263 | 14380 | 4191 | 196 | 4.6767 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.5865 | 98.1950 | 77.4326 | 84.5229 | 14308 | 263 | 14380 | 4191 | 196 | 4.6767 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | het | 76.8097 | 71.1707 | 83.4191 | 81.2554 | 21095 | 8545 | 21070 | 4188 | 136 | 3.2474 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 91.6276 | 91.2822 | 91.9757 | 41.4101 | 29203 | 2789 | 47992 | 4187 | 3097 | 73.9670 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 28.4364 | 92.2444 | 16.8091 | 77.5112 | 785 | 66 | 846 | 4187 | 78 | 1.8629 | |
| eyeh-varpipe | INDEL | D1_5 | * | homalt | 95.4519 | 99.1150 | 92.0499 | 59.2107 | 48493 | 433 | 48444 | 4184 | 4111 | 98.2553 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.7363 | 86.3984 | 87.0769 | 60.8804 | 27136 | 4272 | 28091 | 4169 | 1922 | 46.1022 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.7363 | 86.3984 | 87.0769 | 60.8804 | 27136 | 4272 | 28091 | 4169 | 1922 | 46.1022 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.1516 | 85.8124 | 53.8205 | 46.0515 | 4875 | 806 | 4846 | 4158 | 3808 | 91.5825 | |
| gduggal-bwavard | SNP | * | map_siren | het | 96.2598 | 97.0810 | 95.4524 | 69.7950 | 88335 | 2656 | 87233 | 4156 | 368 | 8.8547 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | het | 76.6942 | 71.0212 | 83.3520 | 81.2570 | 20822 | 8496 | 20798 | 4154 | 134 | 3.2258 | |
| mlin-fermikit | SNP | * | map_l100_m2_e1 | homalt | 74.4467 | 68.1285 | 82.0565 | 52.6294 | 18937 | 8859 | 18937 | 4141 | 3961 | 95.6532 | |
| ciseli-custom | INDEL | D6_15 | * | het | 77.1133 | 84.3154 | 71.0447 | 55.4839 | 9773 | 1818 | 10153 | 4138 | 1402 | 33.8811 | |
| egarrison-hhga | INDEL | D1_5 | * | * | 96.9873 | 96.8033 | 97.1720 | 57.4559 | 142054 | 4691 | 142118 | 4136 | 3666 | 88.6364 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 44.1015 | 42.1796 | 46.2069 | 48.7496 | 2241 | 3072 | 3551 | 4134 | 3627 | 87.7358 | |
| ltrigg-rtg1 | SNP | * | * | het | 99.8185 | 99.8570 | 99.7799 | 17.5567 | 1870919 | 2679 | 1871167 | 4127 | 102 | 2.4715 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | homalt | 74.2855 | 67.9468 | 81.9285 | 52.5634 | 18701 | 8822 | 18701 | 4125 | 3945 | 95.6364 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 55.8285 | 72.0960 | 45.5506 | 48.7100 | 1111 | 430 | 3450 | 4124 | 3618 | 87.7304 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 84.7824 | 84.1112 | 85.4645 | 89.6399 | 24150 | 4562 | 24242 | 4123 | 282 | 6.8397 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 84.7824 | 84.1112 | 85.4645 | 89.6399 | 24150 | 4562 | 24242 | 4123 | 282 | 6.8397 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 83.1973 | 74.7833 | 93.7446 | 68.3849 | 11649 | 3928 | 61758 | 4121 | 4009 | 97.2822 | |
| ghariani-varprowl | SNP | tv | HG002complexvar | * | 98.9457 | 99.5507 | 98.3479 | 26.3760 | 245046 | 1106 | 245266 | 4120 | 790 | 19.1748 | |
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | het | 7.4887 | 61.5385 | 3.9869 | 41.9228 | 128 | 80 | 171 | 4118 | 4099 | 99.5386 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 69.4306 | 91.0941 | 56.0913 | 63.9073 | 3222 | 315 | 5258 | 4116 | 3904 | 94.8494 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | * | 81.1632 | 76.8673 | 85.9677 | 74.4366 | 25244 | 7597 | 25198 | 4113 | 1141 | 27.7413 | |
| eyeh-varpipe | INDEL | D1_5 | HG002compoundhet | * | 54.4680 | 50.0613 | 59.7255 | 65.1711 | 6125 | 6110 | 6092 | 4108 | 4053 | 98.6611 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.5008 | 99.2225 | 67.7227 | 54.9332 | 8295 | 65 | 8615 | 4106 | 4035 | 98.2708 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.5008 | 99.2225 | 67.7227 | 54.9332 | 8295 | 65 | 8615 | 4106 | 4035 | 98.2708 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.0207 | 91.2790 | 79.5656 | 57.4207 | 16265 | 1554 | 15972 | 4102 | 4011 | 97.7816 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 40.0585 | 36.9961 | 43.6736 | 81.3091 | 3111 | 5298 | 3179 | 4100 | 363 | 8.8537 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | homalt | 73.8610 | 67.4221 | 81.6596 | 48.7624 | 18206 | 8797 | 18206 | 4089 | 3913 | 95.6958 | |
| ciseli-custom | SNP | ti | HG002compoundhet | het | 71.3901 | 79.1057 | 65.0459 | 46.7631 | 7519 | 1986 | 7585 | 4076 | 149 | 3.6555 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | het | 76.3493 | 70.6009 | 83.1168 | 80.0504 | 20045 | 8347 | 20022 | 4067 | 129 | 3.1719 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.9743 | 90.3292 | 93.6805 | 71.4710 | 58200 | 6231 | 60215 | 4062 | 3944 | 97.0950 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | het | 6.7114 | 57.6923 | 3.5629 | 37.9971 | 120 | 88 | 150 | 4060 | 4050 | 99.7537 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 83.4518 | 96.9037 | 73.2793 | 50.2099 | 11079 | 354 | 11126 | 4057 | 61 | 1.5036 | |
| jmaeng-gatk | SNP | ti | * | * | 99.6502 | 99.4959 | 99.8049 | 21.8521 | 2074998 | 10513 | 2074939 | 4056 | 178 | 4.3886 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.6364 | 59.0060 | 60.2804 | 68.5856 | 4357 | 3027 | 6148 | 4051 | 1556 | 38.4103 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1509 | 37.5633 | 45.4962 | 49.7904 | 2374 | 3946 | 3379 | 4048 | 3339 | 82.4852 | |