PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85451-85500 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | * | 10.3239 | 8.1742 | 14.0078 | 68.9924 | 1010 | 11346 | 1001 | 6145 | 6014 | 97.8682 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.8331 | 93.3976 | 58.3587 | 78.4954 | 8530 | 603 | 8633 | 6160 | 87 | 1.4123 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.8331 | 93.3976 | 58.3587 | 78.4954 | 8530 | 603 | 8633 | 6160 | 87 | 1.4123 | |
| gduggal-bwaplat | SNP | ti | * | * | 99.0047 | 98.3196 | 99.6994 | 24.2468 | 2050467 | 35044 | 2050804 | 6183 | 880 | 14.2326 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | * | 38.6407 | 34.4667 | 43.9649 | 65.5035 | 4217 | 8018 | 4859 | 6193 | 4434 | 71.5970 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.9598 | 95.4921 | 90.5582 | 61.3692 | 29106 | 1374 | 59456 | 6199 | 3476 | 56.0736 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.9598 | 95.4921 | 90.5582 | 61.3692 | 29106 | 1374 | 59456 | 6199 | 3476 | 56.0736 | |
| qzeng-custom | INDEL | * | HG002compoundhet | * | 82.2978 | 79.3825 | 85.4354 | 55.6867 | 23783 | 6177 | 36410 | 6207 | 4106 | 66.1511 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.7638 | 36.3625 | 49.0496 | 86.4561 | 5846 | 10231 | 5987 | 6219 | 484 | 7.7826 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 41.7638 | 36.3625 | 49.0496 | 86.4561 | 5846 | 10231 | 5987 | 6219 | 484 | 7.7826 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 67.6742 | 98.1523 | 51.6392 | 81.2351 | 6534 | 123 | 6647 | 6225 | 139 | 2.2329 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 75.6874 | 87.3937 | 66.7467 | 68.5588 | 12021 | 1734 | 12511 | 6233 | 2150 | 34.4938 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 75.6874 | 87.3937 | 66.7467 | 68.5588 | 12021 | 1734 | 12511 | 6233 | 2150 | 34.4938 | |
| ghariani-varprowl | INDEL | I1_5 | HG002compoundhet | * | 10.6218 | 8.4898 | 14.1837 | 70.9227 | 1049 | 11307 | 1033 | 6250 | 6046 | 96.7360 | |
| jpowers-varprowl | INDEL | I6_15 | * | * | 57.4140 | 50.4492 | 66.6100 | 47.5997 | 12523 | 12300 | 12542 | 6287 | 6247 | 99.3638 | |
| ghariani-varprowl | INDEL | D1_5 | HG002compoundhet | * | 18.5546 | 15.5456 | 23.0082 | 71.0145 | 1902 | 10333 | 1880 | 6291 | 6060 | 96.3281 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 59.0651 | 56.3393 | 62.0679 | 49.1269 | 10287 | 7972 | 10307 | 6299 | 4780 | 75.8851 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 69.0612 | 65.8068 | 72.6543 | 37.5809 | 16149 | 8391 | 16741 | 6301 | 4632 | 73.5121 | |
| ghariani-varprowl | SNP | * | HG002compoundhet | * | 85.5640 | 92.8588 | 79.3318 | 55.0838 | 23978 | 1844 | 24220 | 6310 | 2033 | 32.2187 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 57.2793 | 53.5509 | 61.5656 | 80.5733 | 7367 | 6390 | 10114 | 6314 | 1790 | 28.3497 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 57.2793 | 53.5509 | 61.5656 | 80.5733 | 7367 | 6390 | 10114 | 6314 | 1790 | 28.3497 | |
| qzeng-custom | SNP | * | * | het | 99.4239 | 99.1899 | 99.6590 | 25.4299 | 1858423 | 15178 | 1850061 | 6331 | 818 | 12.9205 | |
| egarrison-hhga | INDEL | * | * | het | 97.8735 | 98.9564 | 96.8141 | 57.0135 | 192107 | 2026 | 193181 | 6357 | 5653 | 88.9256 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | * | 83.9950 | 90.1789 | 78.6048 | 56.2142 | 23286 | 2536 | 23381 | 6364 | 715 | 11.2351 | |
| ghariani-varprowl | INDEL | I6_15 | * | * | 61.1674 | 55.3640 | 68.3299 | 52.2203 | 13743 | 11080 | 13763 | 6379 | 6287 | 98.5578 | |
| ciseli-custom | INDEL | I1_5 | HG002compoundhet | * | 12.1122 | 9.5913 | 16.4310 | 70.5188 | 1185 | 11170 | 1255 | 6383 | 5985 | 93.7647 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 68.5075 | 66.4183 | 70.7325 | 47.6018 | 13192 | 6670 | 15431 | 6385 | 4862 | 76.1472 | |
| gduggal-snapvard | SNP | * | HG002complexvar | het | 97.7612 | 96.9682 | 98.5672 | 22.3358 | 451386 | 14113 | 439324 | 6386 | 2268 | 35.5152 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.7820 | 95.3547 | 26.7520 | 84.5618 | 2258 | 110 | 2340 | 6407 | 146 | 2.2788 | |
| mlin-fermikit | SNP | * | map_siren | * | 83.3638 | 74.6157 | 94.4357 | 47.0930 | 109109 | 37119 | 109094 | 6428 | 5503 | 85.6098 | |
| ciseli-custom | INDEL | * | HG002complexvar | het | 83.6520 | 81.8863 | 85.4955 | 58.3237 | 37838 | 8370 | 38019 | 6450 | 2732 | 42.3566 | |
| jpowers-varprowl | SNP | ti | * | het | 99.4145 | 99.3343 | 99.4948 | 22.7953 | 1273353 | 8534 | 1273511 | 6466 | 293 | 4.5314 | |
| egarrison-hhga | INDEL | * | HG002compoundhet | * | 77.4600 | 76.5788 | 78.3617 | 71.3882 | 22943 | 7017 | 23485 | 6485 | 6131 | 94.5412 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.0572 | 89.8904 | 90.2247 | 50.1569 | 38954 | 4381 | 59902 | 6490 | 4175 | 64.3297 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | * | 77.5493 | 76.6121 | 78.5097 | 71.2626 | 22953 | 7007 | 23717 | 6492 | 6061 | 93.3611 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 64.5845 | 75.5146 | 56.4183 | 33.5145 | 5576 | 1808 | 8421 | 6505 | 5048 | 77.6018 | |
| ckim-isaac | INDEL | * | * | * | 95.8099 | 93.7006 | 98.0163 | 48.2658 | 322838 | 21704 | 321857 | 6514 | 4603 | 70.6632 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 89.1402 | 99.2630 | 80.8911 | 72.6164 | 27474 | 204 | 27579 | 6515 | 214 | 3.2847 | |
| anovak-vg | SNP | * | * | homalt | 99.1091 | 98.7819 | 99.4384 | 16.6644 | 1165787 | 14375 | 1158439 | 6543 | 5522 | 84.3955 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.2783 | 97.3461 | 80.7559 | 60.7530 | 27217 | 742 | 27478 | 6548 | 433 | 6.6127 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.2424 | 96.3582 | 60.3834 | 43.4396 | 10028 | 379 | 9985 | 6551 | 6388 | 97.5118 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 64.5823 | 60.5420 | 69.2004 | 40.5056 | 14857 | 9683 | 14739 | 6560 | 6397 | 97.5152 | |
| ghariani-varprowl | INDEL | * | HG002complexvar | * | 91.5434 | 91.6620 | 91.4251 | 69.4318 | 70522 | 6415 | 70273 | 6591 | 5330 | 80.8679 | |
| jpowers-varprowl | SNP | tv | * | het | 99.1037 | 99.3176 | 98.8908 | 29.6901 | 587657 | 4038 | 587824 | 6593 | 166 | 2.5178 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.9084 | 97.6773 | 45.3144 | 61.3396 | 5467 | 130 | 5469 | 6600 | 6491 | 98.3485 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 74.2906 | 94.9819 | 61.0017 | 81.9477 | 10259 | 542 | 10341 | 6611 | 313 | 4.7345 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 48.3943 | 45.1362 | 52.1594 | 60.4503 | 7243 | 8804 | 7210 | 6613 | 6501 | 98.3064 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.6668 | 95.6114 | 95.7223 | 68.1753 | 90304 | 4145 | 148271 | 6626 | 3965 | 59.8400 | |
| ciseli-custom | SNP | ti | HG002compoundhet | * | 76.3715 | 85.1127 | 69.2586 | 41.8951 | 14876 | 2602 | 14928 | 6626 | 715 | 10.7908 | |
| gduggal-snapplat | SNP | ti | HG002complexvar | het | 97.6877 | 97.4934 | 97.8828 | 21.8010 | 306876 | 7890 | 307493 | 6651 | 990 | 14.8850 | |