PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
84251-84300 / 86044 show all
cchapple-customSNP*map_l100_m1_e0*
97.5223
97.7156
97.3298
67.9657
707491654707501941403
20.7625
gduggal-snapvardSNP*map_l250_m1_e0het
81.0291
96.2566
69.9614
91.9347
45771784530194587
4.4730
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
90.5655
92.3733
88.8270
56.6366
1646013591547919471601
82.2291
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
84.8407
79.4106
91.0680
42.1071
99432578199021952731
37.4488
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
62.4607
73.6600
54.2174
39.2369
481172231419541945
99.5394
gduggal-snapplatINDELD1_5HG002compoundhethomalt
26.1575
72.5086
15.9570
58.0098
2118037119541741
89.0993
ghariani-varprowlSNPtvHG002compoundhethet
78.1241
90.1776
68.9129
69.5656
42144594336195610
0.5112
anovak-vgINDELI6_15HG002compoundhet*
31.2822
22.7666
49.9744
31.5356
19986778195419561488
76.0736
gduggal-snapvardSNP*map_l250_m1_e0*
85.6069
95.3199
77.6904
91.0746
68843386815195796
4.9055
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.9539
95.3891
85.1048
47.7198
4241205112101962925
47.1458
cchapple-customSNP*map_l100_m2_e0het
96.8591
97.8857
95.8537
73.9797
45418981454731967406
20.6406
gduggal-snapvardINDELD6_15HG002compoundhethet
67.0812
63.3178
71.3203
33.1905
542314489419681718
87.2967
gduggal-snapvardINDELD6_15HG002compoundhet*
59.7955
51.4782
71.3183
33.2912
46494382489619691719
87.3032
cchapple-customSNP*map_l100_m2_e0*
97.5457
97.7435
97.3487
69.9609
722951669722971969408
20.7212
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
90.4147
91.9985
88.8845
55.6709
147631284157931975866
43.8481
ltrigg-rtg1SNPti*het
99.8539
99.8618
99.8460
16.3632
128012317711280140197552
2.6329
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
83.3290
92.2710
75.9669
53.2043
619651962461976523
26.4676
gduggal-snapfbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
56.0716
49.9257
63.9431
62.6651
2017202335061977448
22.6606
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
45.1028
77.9188
31.7367
57.3110
92126192119811814
91.5699
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.0910
79.0543
85.3704
89.9548
115193052115601981144
7.2691
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.0910
79.0543
85.3704
89.9548
115193052115601981144
7.2691
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
36.9440
68.9906
25.2262
52.0434
66329866919831976
99.6470
cchapple-customSNP*map_l100_m2_e1het
96.8714
97.9018
95.8624
74.0033
45914984459671984408
20.5645
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.2279
98.0433
75.3754
62.9512
60631216073198452
2.6210
cchapple-customSNP*map_l100_m2_e1*
97.5551
97.7575
97.3536
69.9828
730611676730601986410
20.6445
eyeh-varpipeINDELI6_15HG002compoundhethomalt
2.5353
74.1935
1.2897
22.4317
2382619901987
99.8492
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
90.8245
87.6365
94.2532
40.4574
3321646863268719931737
87.1550
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.7195
36.5649
68.6675
29.6562
10901891437019941989
99.7492
ciseli-customSNP*map_l125_m0_e0het
73.0283
66.5824
80.8560
84.3182
843242328426199566
3.3083
gduggal-snapvardSNP*map_l250_m2_e0het
81.9515
96.3612
71.2908
92.3358
50051894954199592
4.6115
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.2248
91.8756
81.2289
81.5160
839174286461998399
19.9700
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.2248
91.8756
81.2289
81.5160
839174286461998399
19.9700
jlack-gatkSNPtimap_l100_m1_e0het
96.3792
99.2318
93.6859
77.4968
29712230297052002175
8.7413
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
22.1585
18.8343
26.9076
54.2967
740318973720021995
99.6503
gduggal-snapvardSNP*map_l250_m2_e1het
82.0702
96.3526
71.4754
92.4111
50721925019200393
4.6430
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.0812
74.2799
86.8654
57.3222
1312645451326020051766
88.0798
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.0812
74.2799
86.8654
57.3222
1312645451326020051766
88.0798
ciseli-customSNP*map_l150_m0_e0*
75.3031
70.4787
80.8364
85.2202
8480355284662007507
25.2616
gduggal-snapvardSNP*map_l250_m2_e0*
86.3034
95.4344
78.7671
91.5243
752536074492008101
5.0299
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
70.1659
88.4506
58.1458
66.8417
217528427912009225
11.1996
gduggal-snapvardSNP*map_l250_m2_e1*
86.3822
95.4176
78.9099
91.6016
762136675432016102
5.0595
jlack-gatkSNPtimap_l100_m1_e0*
97.4794
99.0945
95.9161
72.9428
47497434474902022193
9.5450
ghariani-varprowlINDELD1_5HG002complexvar*
93.6809
93.5932
93.7688
56.5500
3061920963047320251375
67.9012
eyeh-varpipeINDELI6_15*homalt
77.6886
84.0359
72.2329
34.4939
5243996527320272012
99.2600
ghariani-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
65.9654
55.6526
80.9698
74.3202
86696908863320291680
82.7994
gduggal-snapvardSNPtvmap_l100_m1_e0het
92.4877
97.3990
88.0480
78.4967
15016401149622031139
6.8439
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
37.5716
28.2822
55.9480
46.5176
17884534258220331650
81.1608
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
37.5716
28.2822
55.9480
46.5176
17884534258220331650
81.1608
jlack-gatkSNPtimap_l100_m2_e0het
96.4036
99.2424
93.7226
78.7202
30390232303832035176
8.6487
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
80.9211
77.9906
84.0804
49.2093
1075130341074820352023
99.4103