PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1201-1250 / 86044 show all
qzeng-customINDELD1_5tech_badpromoters*
100.0000
100.0000
100.0000
44.8276
1901600
qzeng-customINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
qzeng-customINDELD1_5tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
20000
qzeng-customINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
42.8571
90800
qzeng-customINDELD6_15decoy*
100.0000
100.0000
10000
qzeng-customINDELD6_15decoyhetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD6_15func_cdshomalt
89.6552
100.0000
81.2500
50.0000
1201331
33.3333
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
60.0000
100.0000
42.8571
97.1774
30340
0.0000
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.4127
10100
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
57.1429
100.0000
40.0000
97.7876
20230
0.0000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
100.0000
50.0000
92.5926
20110
0.0000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
91.6667
10110
0.0000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
10000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
81.7352
100.0000
69.1120
78.6831
1550179805
6.2500
qzeng-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
72.9858
100.0000
57.4627
71.8487
74077570
0.0000
qzeng-customINDELD6_15map_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
20000
qzeng-customINDELD6_15map_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
20000
qzeng-customINDELD6_15map_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
20000
qzeng-customINDELD6_15segduphomalt
94.9495
100.0000
90.3846
91.3765
5004753
60.0000
qzeng-customINDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
48.4848
1701700
qzeng-customINDELD6_15tech_badpromotershet
100.0000
100.0000
100.0000
41.1765
1001000
qzeng-customINDELD6_15tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
56.2500
60700
qzeng-customINDELI16_PLUSHG002compoundhethomalt
5.3812
100.0000
2.7650
59.0566
306211173
81.9905
qzeng-customINDELI16_PLUSfunc_cdshet
88.8889
100.0000
80.0000
61.5385
90820
0.0000
qzeng-customINDELI16_PLUSfunc_cdshomalt
57.1429
100.0000
40.0000
73.6842
20230
0.0000
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
95.0820
100.0000
90.6250
75.3846
1602931
33.3333
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
60.4938
220969685
88.5417
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
75.4717
100.0000
60.6061
66.3265
8020136
46.1538
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
50.0000
20100
qzeng-customINDELI16_PLUSmap_l125_m0_e0het
80.0000
100.0000
66.6667
93.2836
30630
0.0000
qzeng-customINDELI16_PLUSmap_l150_m0_e0het
75.0000
100.0000
60.0000
95.5357
20320
0.0000
qzeng-customINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
94.4444
10200
qzeng-customINDELI16_PLUSmap_l250_m1_e0*
66.6667
100.0000
50.0000
96.1290
10330
0.0000
qzeng-customINDELI16_PLUSmap_l250_m1_e0het
75.0000
100.0000
60.0000
95.4955
10320
0.0000
qzeng-customINDELI16_PLUSmap_l250_m2_e0*
66.6667
100.0000
50.0000
96.3415
10330
0.0000
qzeng-customINDELI16_PLUSmap_l250_m2_e0het
75.0000
100.0000
60.0000
95.6897
10320
0.0000
qzeng-customINDELI16_PLUSmap_l250_m2_e1*
66.6667
100.0000
50.0000
96.4072
10330
0.0000
qzeng-customINDELI16_PLUSmap_l250_m2_e1het
75.0000
100.0000
60.0000
95.7265
10320
0.0000
qzeng-customINDELI16_PLUSsegduphomalt
87.8049
100.0000
78.2609
90.9091
1901851
20.0000
qzeng-customINDELI16_PLUStech_badpromoters*
90.9091
100.0000
83.3333
53.8462
40510
0.0000
qzeng-customINDELI16_PLUStech_badpromotershet
85.7143
100.0000
75.0000
42.8571
20310
0.0000
qzeng-customINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
60.0000
20200
qzeng-customINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
0.0000
20100
qzeng-customINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
25.6098
119012200
qzeng-customINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
10000
qzeng-customINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
10000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
10000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
10000
qzeng-customINDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
55.8140
2201900