PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 3 4 5 6 7 8 9 ... 1720 1721 » 201-250 / 86044 show all
rpoplin-dv42	INDEL	I1_5	map_l250_m2_e1	homalt	96.7742	97.8261	95.7447	95.0888	45	1	45	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l250_m2_e0	homalt	96.7033	97.7778	95.6522	95.0378	44	1	44	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l250_m1_e0	homalt	96.6292	97.7273	95.5556	94.2602	43	1	43	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	97.1787	9	0	9	0	0
rpoplin-dv42	INDEL	I1_5	map_l150_m2_e1	homalt	99.2665	99.5098	99.0244	88.6364	203	1	203	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l150_m2_e0	homalt	99.2556	99.5025	99.0099	88.4966	200	1	200	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l150_m1_e0	homalt	99.2443	99.4949	98.9950	87.0358	197	1	197	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	88.9610	67	0	67	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	map_l125_m2_e1	homalt	99.4169	99.4169	99.4169	84.8965	341	2	341	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l125_m2_e0	homalt	99.4135	99.4135	99.4135	84.6119	339	2	339	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l125_m1_e0	homalt	99.3884	99.3884	99.3884	83.3672	325	2	325	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l125_m0_e0	homalt	99.1304	100.0000	98.2759	85.5721	114	0	114	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e1	homalt	99.2606	99.4444	99.0775	82.2062	537	3	537	5	3	60.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m2_e0	homalt	99.3415	99.4350	99.2481	82.1297	528	3	528	4	2	50.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m1_e0	homalt	99.4220	99.6139	99.2308	80.6620	516	2	516	4	2	50.0000
rpoplin-dv42	INDEL	I1_5	map_l100_m0_e0	homalt	99.0431	99.5192	98.5714	80.9264	207	1	207	3	2	66.6667
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6241	99.2509	100.0000	64.3909	265	2	266	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt		0.0000	0.0000	99.1803	0	1	0	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.8202	98.3099	99.3359	67.6190	1047	18	1047	7	5	71.4286
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5344	99.3802	99.6891	63.3219	962	6	962	3	3	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.1200	97.1631	99.0958	72.4464	548	16	548	5	5	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.3072	97.2880	99.3480	72.0840	3659	102	3657	24	22	91.6667
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0325	97.2835	98.7931	73.7259	1146	32	1146	14	13	92.8571
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.3260	97.7233	98.9362	63.8924	558	13	558	6	5	83.3333
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.2050	96.4561	97.9656	65.7923	626	23	626	13	12	92.3077
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.4410	87.8049	91.1392	77.4286	72	10	72	7	7	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4186	98.8439	100.0000	78.2581	342	4	342	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4742	98.9540	100.0000	75.3389	473	5	473	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4848	97.5000	99.4898	65.3710	195	5	195	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.3072	97.2880	99.3480	72.0840	3659	102	3657	24	22	91.6667
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.9624	98.4167	99.5141	71.6519	3481	56	3482	17	15	88.2353
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6989	94.3463	97.0909	72.3061	267	16	267	8	8	100.0000
rpoplin-dv42	INDEL	I1_5	func_cds	homalt	100.0000	100.0000	100.0000	31.6092	119	0	119	0	0
rpoplin-dv42	INDEL	I1_5	decoy	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I1_5	HG002compoundhet	homalt	90.7042	97.8723	84.5144	83.9037	322	7	322	59	58	98.3051
rpoplin-dv42	INDEL	I1_5	HG002complexvar	homalt	99.7169	99.5464	99.8881	51.4705	13387	61	13384	15	14	93.3333
rpoplin-dv42	INDEL	I1_5	*	homalt	99.6318	99.4026	99.8620	52.4571	60067	361	60064	83	77	92.7711
rpoplin-dv42	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
rpoplin-dv42	INDEL	I16_PLUS	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
rpoplin-dv42	INDEL	I16_PLUS	segdup	homalt	97.2973	94.7368	100.0000	89.4737	18	1	18	0	0
rpoplin-dv42	INDEL	I16_PLUS	map_siren	homalt	90.0000	85.7143	94.7368	76.8293	18	3	18	1	1	100.0000
rpoplin-dv42	INDEL	I16_PLUS	map_l250_m2_e1	homalt		0.0000		100.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge