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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 23 24 25 26 27 28 29 30 31 ... 1720 1721 » 1301-1350 / 86044 show all
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5189	99.8302	99.2095	64.3231	1764	3	1757	14	7	50.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2401	98.9858	99.4956	77.2155	5368	55	5326	27	13	48.1481
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.4970	99.5995	99.3948	81.7770	1492	6	1478	9	8	88.8889
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0381	99.3603	98.7179	86.0756	466	3	462	6	5	83.3333
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.9116	99.2110	98.6139	86.9408	503	4	498	7	6	85.7143
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.3260	97.5610	95.1220	92.6391	40	1	39	2	2	100.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	71.9914	525	0	519	0	0
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	66.9499	786	0	778	0	0
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6872	99.5842	99.7904	53.5992	479	2	476	1	1	100.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2401	98.9858	99.4956	77.2155	5368	55	5326	27	13	48.1481
qzeng-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7317	99.7821	99.6812	62.4851	10075	22	10007	32	21	65.6250
qzeng-custom	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
qzeng-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3290	99.4275	99.2308	69.0660	521	3	516	4	4	100.0000
qzeng-custom	SNP	tv	func_cds	homalt	99.8531	99.7066	100.0000	25.3758	1699	5	1688	0	0
qzeng-custom	SNP	tv	decoy	homalt	0.0000	0.0000	100.0000	99.9938	0	0	1	0	0
qzeng-custom	SNP	tv	HG002compoundhet	homalt	98.8473	99.1145	98.5816	49.2075	3358	30	2780	40	35	87.5000
qzeng-custom	SNP	tv	HG002complexvar	homalt	99.2146	98.6185	99.8179	23.3623	93797	1314	91543	167	141	84.4311
qzeng-custom	SNP	tv	*	homalt	99.5964	99.2947	99.8999	20.4155	374463	2660	372209	373	242	64.8794
qzeng-custom	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	41.1765	41	0	40	0	0
qzeng-custom	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
qzeng-custom	SNP	ti	segdup	homalt	99.3042	99.2005	99.4081	87.0359	7445	60	7390	44	39	88.6364
qzeng-custom	SNP	ti	map_siren	homalt	93.0187	87.2719	99.5758	47.6263	33090	4826	32626	139	121	87.0504
qzeng-custom	SNP	ti	map_l250_m2_e1	homalt	74.0705	59.2551	98.7643	89.0815	1050	722	1039	13	12	92.3077
qzeng-custom	SNP	ti	map_l250_m2_e0	homalt	73.9407	59.0623	98.8395	89.1089	1033	716	1022	12	11	91.6667
qzeng-custom	SNP	ti	map_l250_m1_e0	homalt	72.8401	57.4984	99.3478	88.5158	924	683	914	6	6	100.0000
qzeng-custom	SNP	ti	map_l250_m0_e0	homalt	67.7742	51.3761	99.5475	94.9738	224	212	220	1	1	100.0000
qzeng-custom	SNP	ti	map_l150_m2_e1	homalt	80.1365	67.1910	99.2610	72.9055	5169	2524	5104	38	38	100.0000
qzeng-custom	SNP	ti	map_l150_m2_e0	homalt	79.9782	66.9643	99.2706	72.9194	5100	2516	5036	37	37	100.0000
qzeng-custom	SNP	ti	map_l150_m1_e0	homalt	79.2986	65.9888	99.3340	70.0903	4835	2492	4773	32	32	100.0000
qzeng-custom	SNP	ti	map_l150_m0_e0	homalt	72.5105	57.1894	99.0446	79.2025	1579	1182	1555	15	15	100.0000
qzeng-custom	SNP	ti	map_l125_m2_e1	homalt	83.4603	71.9759	99.3054	66.9858	8247	3211	8149	57	56	98.2456
qzeng-custom	SNP	ti	map_l125_m2_e0	homalt	83.3237	71.7644	99.3217	66.9963	8151	3207	8054	55	54	98.1818
qzeng-custom	SNP	ti	map_l125_m1_e0	homalt	82.9138	71.1453	99.3472	63.5077	7858	3187	7762	51	50	98.0392
qzeng-custom	SNP	ti	map_l125_m0_e0	homalt	76.3240	61.9906	99.2790	71.5020	2784	1707	2754	20	19	95.0000
qzeng-custom	SNP	ti	map_l100_m2_e1	homalt	88.0999	79.0797	99.4428	59.4081	14625	3869	14457	81	75	92.5926
qzeng-custom	SNP	ti	map_l100_m2_e0	homalt	87.9965	78.9175	99.4361	59.4553	14449	3860	14284	81	75	92.5926
qzeng-custom	SNP	ti	map_l100_m1_e0	homalt	87.7858	78.5523	99.4792	55.9352	14108	3852	13944	73	71	97.2603
qzeng-custom	SNP	ti	map_l100_m0_e0	homalt	81.6311	69.2951	99.3106	61.6670	5387	2387	5330	37	36	97.2973
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000	0.0000	95.9184	0	2	0	2	1	50.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.5072	99.1591	99.8579	31.1980	1415	12	1405	2	2	100.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.5507	97.1429	100.0000	93.0712	34	1	37	0	0
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5851	99.5485	99.6217	39.7050	3969	18	3950	15	6	40.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7726	99.6365	99.9090	41.7859	2193	8	2195	2	1	50.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	100.0000	100.0000	100.0000	96.1039	6	0	6	0	0
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2303	99.2299	99.2308	68.4878	1675	13	1677	13	7	53.8462

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