PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85101-85150 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3881 | 95.8010 | 99.0287 | 53.0662 | 16929 | 742 | 16924 | 166 | 154 | 92.7711 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7868 | 96.4686 | 99.1416 | 42.5996 | 9124 | 334 | 9124 | 79 | 75 | 94.9367 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.7448 | 77.6461 | 93.2722 | 41.8494 | 917 | 264 | 915 | 66 | 66 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4329 | 98.8722 | 100.0000 | 80.9005 | 263 | 3 | 263 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.3204 | 80.7018 | 100.0000 | 99.3925 | 46 | 11 | 46 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9744 | 98.1557 | 99.8069 | 48.5309 | 3619 | 68 | 3619 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.0579 | 95.3612 | 98.8161 | 48.1800 | 1254 | 61 | 1252 | 15 | 10 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3905 | 98.9595 | 99.8252 | 33.0994 | 1712 | 18 | 1713 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8546 | 96.4789 | 99.2701 | 42.4370 | 137 | 5 | 136 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0874 | 97.0874 | 97.0874 | 86.4652 | 100 | 3 | 100 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | * | 97.0530 | 95.7364 | 98.4064 | 83.5733 | 247 | 11 | 247 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | * | 96.9231 | 95.4545 | 98.4375 | 84.3807 | 252 | 12 | 252 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | * | 96.8577 | 95.2727 | 98.4962 | 84.2230 | 262 | 13 | 262 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 90.7631 | 46 | 1 | 46 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.2000 | 83.8235 | 100.0000 | 96.3344 | 57 | 11 | 57 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6301 | 97.6017 | 99.6805 | 67.8645 | 936 | 23 | 936 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.0242 | 95.4545 | 98.6464 | 64.6742 | 588 | 28 | 583 | 8 | 8 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.4127 | 98.7261 | 98.1013 | 62.9977 | 155 | 2 | 155 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1818 | 89.1304 | 97.6190 | 65.2893 | 41 | 5 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.6667 | 92.8571 | 81.2500 | 94.6932 | 26 | 2 | 26 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 92.2421 | 80 | 7 | 80 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 93.0250 | 83 | 7 | 83 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.8990 | 91.7526 | 88.1188 | 92.8011 | 89 | 8 | 89 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.3177 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 93.1034 | 100.0000 | 87.0968 | 94.5133 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 93.1034 | 100.0000 | 87.0968 | 95.2888 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.5254 | 96.4286 | 87.0968 | 95.4210 | 27 | 1 | 27 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2381 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 94.8571 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 89.4737 | 100.0000 | 80.9524 | 95.0237 | 17 | 0 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 87.1795 | 94.4444 | 80.9524 | 95.1276 | 17 | 1 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 95.3846 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.5224 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 95.6790 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 95.7317 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | * | 92.3827 | 93.7063 | 91.0959 | 92.6633 | 134 | 9 | 133 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.3811 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | * | * | 99.5052 | 99.1482 | 99.8648 | 57.2252 | 145495 | 1250 | 145547 | 197 | 112 | 56.8528 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002complexvar | * | 99.1888 | 98.4747 | 99.9133 | 56.8376 | 32216 | 499 | 32267 | 28 | 18 | 64.2857 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | * | 95.7858 | 92.7013 | 99.0826 | 62.4019 | 11342 | 893 | 11341 | 105 | 101 | 96.1905 | |
| hfeng-pmm1 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9303 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 38.0769 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8440 | 91.1898 | 98.8034 | 58.6110 | 3633 | 351 | 3633 | 44 | 35 | 79.5455 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8453 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1973 | 98.5845 | 99.8177 | 71.4580 | 63519 | 912 | 63531 | 116 | 89 | 76.7241 | |