PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
801-850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 86.0465 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1795 | 59 | 0 | 59 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5392 | 100.0000 | 99.0826 | 66.3060 | 216 | 0 | 216 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.1538 | 49 | 0 | 49 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.8354 | 100.0000 | 93.8650 | 76.7806 | 153 | 0 | 153 | 10 | 9 | 90.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.0484 | 99.6364 | 94.5915 | 70.0964 | 822 | 3 | 822 | 47 | 45 | 95.7447 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.0920 | 99.6785 | 90.9091 | 69.4991 | 310 | 1 | 310 | 31 | 30 | 96.7742 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.4724 | 100.0000 | 89.5238 | 67.0846 | 188 | 0 | 188 | 22 | 21 | 95.4545 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.5412 | 99.5261 | 88.2353 | 68.7254 | 210 | 1 | 210 | 28 | 27 | 96.4286 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.7925 | 95.8333 | 79.3103 | 78.0303 | 23 | 1 | 23 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 69.4323 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.3957 | 100.0000 | 96.8421 | 68.8525 | 92 | 0 | 92 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2973 | 100.0000 | 94.7368 | 68.5950 | 36 | 0 | 36 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.0484 | 99.6364 | 94.5915 | 70.0964 | 822 | 3 | 822 | 47 | 45 | 95.7447 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9010 | 100.0000 | 95.8884 | 72.2268 | 653 | 0 | 653 | 28 | 27 | 96.4286 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.0635 | 98.3051 | 86.5672 | 75.1852 | 58 | 1 | 58 | 9 | 9 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.3077 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | homalt | 16.3588 | 100.0000 | 8.9080 | 58.9623 | 31 | 0 | 31 | 317 | 315 | 99.3691 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | homalt | 98.1789 | 99.9176 | 96.4996 | 55.2987 | 1213 | 1 | 1213 | 44 | 44 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | * | homalt | 97.3324 | 99.7115 | 95.0642 | 52.3622 | 6221 | 18 | 6221 | 323 | 318 | 98.4520 | |
| raldana-dualsentieon | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I1_5 | segdup | homalt | 99.4720 | 99.5772 | 99.3671 | 92.4798 | 471 | 2 | 471 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | homalt | 99.6286 | 99.5050 | 99.7525 | 77.1148 | 1206 | 6 | 1209 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7033 | 95.6522 | 97.7778 | 94.5718 | 44 | 2 | 44 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6292 | 95.5556 | 97.7273 | 94.5342 | 43 | 2 | 43 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2185 | 9 | 0 | 9 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5222 | 98.0392 | 99.0099 | 87.7204 | 200 | 4 | 200 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5000 | 98.0100 | 98.9950 | 87.6012 | 197 | 4 | 197 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4772 | 97.9798 | 98.9796 | 85.7765 | 194 | 4 | 194 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 87.2624 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1228 | 98.8338 | 99.4135 | 83.7309 | 339 | 4 | 339 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1176 | 98.8270 | 99.4100 | 83.4553 | 337 | 4 | 337 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0798 | 98.7768 | 99.3846 | 81.8942 | 323 | 4 | 323 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6900 | 99.1228 | 98.2609 | 83.5479 | 113 | 1 | 113 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3513 | 99.2593 | 99.4434 | 80.9339 | 536 | 4 | 536 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3402 | 99.2467 | 99.4340 | 80.8110 | 527 | 4 | 527 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3237 | 99.2278 | 99.4197 | 79.1700 | 514 | 4 | 514 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2806 | 99.5192 | 99.0431 | 78.4758 | 207 | 1 | 207 | 2 | 1 | 50.0000 | |