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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1151-1200 / 86044 show all
astatham-gatkSNP*map_l125_m1_e0*
91.2465
84.0779
99.7513
74.8310
381107217381049543
45.2632
astatham-gatkSNP*map_l125_m2_e0*
91.3143
84.1877
99.7590
76.2743
393357388393299543
45.2632
astatham-gatkSNP*map_l125_m2_e1*
91.3125
84.1829
99.7615
76.3148
397367466397309543
45.2632
astatham-gatkSNP*map_l150_m0_e0*
93.4108
88.0735
99.4368
82.7630
105971435105946021
35.0000
astatham-gatkSNP*map_l150_m1_e0*
91.4460
84.4686
99.6799
78.7872
258554754258498339
46.9880
astatham-gatkSNP*map_l150_m2_e0*
91.4701
84.5033
99.6888
80.0769
269164936269108440
47.6190
astatham-gatkSNP*map_l150_m2_e1*
91.4615
84.4862
99.6922
80.1245
272134997272078440
47.6190
astatham-gatkSNP*map_l250_m0_e0*
93.8786
89.7892
98.3581
93.7904
19172181917328
25.0000
astatham-gatkSNP*map_l250_m1_e0*
92.7803
87.1919
99.1341
90.2158
629792562975519
34.5455
astatham-gatkSNP*map_l250_m2_e0*
92.6519
86.9119
99.2038
90.7351
6853103268535519
34.5455
astatham-gatkSNP*map_l250_m2_e1*
92.6875
86.9663
99.2144
90.7902
6946104169465519
34.5455
astatham-gatkSNP*map_siren*
93.7139
88.2540
99.8939
58.6796
1290521717612902913767
48.9051
astatham-gatkSNP*segdup*
99.1969
98.5784
99.8232
90.3648
27668399276624912
24.4898
astatham-gatkSNP*segdupwithalt*
0.0000
100.0000
00000
astatham-gatkSNP*tech_badpromoters*
97.7492
96.8153
98.7013
49.3421
152515222
100.0000
astatham-gatkSNPti**
99.6161
99.2515
99.9833
17.5605
2069900156112069836345101
29.2754
astatham-gatkSNPtiHG002complexvar*
99.2181
98.4614
99.9866
17.7102
50061378235005486741
61.1940
astatham-gatkSNPtiHG002compoundhet*
99.2746
98.6669
99.8899
35.7263
17245233172431918
94.7368
astatham-gatkSNPtidecoy*
0.0000
100.0000
00000
astatham-gatkSNPtifunc_cds*
99.8730
99.7897
99.9564
22.5679
13758291375660
0.0000
astatham-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.0231
98.3067
99.7501
65.5325
319355319386
75.0000
astatham-gatkSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5168
99.0808
99.9567
54.7993
2770225727701125
41.6667
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9634
98.0991
99.8431
67.2451
30551592305514817
35.4167
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3031
98.7158
99.8974
47.9345
292138292131
33.3333
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7126
99.4764
99.9499
47.9937
399021399020
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8152
99.6720
99.9589
50.5792
24318243110
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
96.9977
95.0226
99.0566
91.2215
2101121022
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.2387
96.8364
99.6823
87.5285
125541125544
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.3923
97.0109
99.8136
86.7219
107133107122
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2670
98.6631
99.8783
77.1278
656889656885
62.5000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9634
98.0991
99.8431
67.2451
30551592305514817
35.4167
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.2293
98.4908
99.9790
69.4708
476473476411
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200*
96.7742
93.7500
100.0000
97.8510
1511500
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6158
99.2821
99.9518
44.5938
622345622332
66.6667
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5369
99.1334
99.9436
40.3106
10639931063961
16.6667
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.8776
91.0891
96.8421
93.5462
9299233
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.5113
99.0527
99.9742
29.4879
386937386811
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.5578
80800
astatham-gatkSNPtimap_l100_m0_e0*
92.5350
86.2891
99.7557
72.1287
187862985187834624
52.1739
astatham-gatkSNPtimap_l100_m1_e0*
92.0088
85.3122
99.8461
68.2409
408917040408846336
57.1429
astatham-gatkSNPtimap_l100_m2_e0*
92.0782
85.4292
99.8496
69.7884
418277134418206336
57.1429
astatham-gatkSNPtimap_l100_m2_e1*
92.0971
85.4623
99.8489
69.7778
422917194422846436
56.2500
astatham-gatkSNPtimap_l125_m0_e0*
92.8568
86.9378
99.6407
77.9287
110951667110934020
50.0000
astatham-gatkSNPtimap_l125_m1_e0*
91.1797
83.9407
99.7852
74.5658
246244711246205329
54.7170
astatham-gatkSNPtimap_l125_m2_e0*
91.2512
84.0571
99.7920
76.0047
254344824254305329
54.7170