PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1694 1695 1696 1697 1698 1699 1700 1701 1702 ... 1720 1721 » 84851-84900 / 86044 show all
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4337	98.8739	100.0000	84.5259	439	5	439	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.0516	381	2	381	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7927	99.5863	100.0000	78.9598	2407	10	2407	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.9134	99.8615	99.9653	69.5900	11536	16	11536	4	3	75.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.9407	99.8815	100.0000	65.2514	1686	2	1686	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	100.0000	100.0000	100.0000	96.6667	6	0	6	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.4084	2199	2	2199	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	100.0000	100.0000	100.0000	36.5834	3987	0	3987	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	93.2099	33	2	33	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	30.2053	1427	0	1427	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	96.2963	2	0	2	0	0
hfeng-pmm1	SNP	ti	map_l100_m0_e0	homalt	99.7619	99.7170	99.8069	63.0178	7752	22	7752	15	6	40.0000
hfeng-pmm1	SNP	ti	map_l100_m1_e0	homalt	99.8580	99.8385	99.8775	60.1505	17931	29	17931	22	12	54.5455
hfeng-pmm1	SNP	ti	map_l100_m2_e0	homalt	99.8607	99.8416	99.8798	62.5925	18280	29	18280	22	12	54.5455
hfeng-pmm1	SNP	ti	map_l100_m2_e1	homalt	99.8621	99.8432	99.8810	62.5754	18465	29	18465	22	12	54.5455
hfeng-pmm1	SNP	ti	map_l125_m0_e0	homalt	99.6547	99.6215	99.6881	70.0040	4474	17	4474	14	5	35.7143
hfeng-pmm1	SNP	ti	map_l125_m1_e0	homalt	99.8143	99.7827	99.8460	66.1307	11021	24	11021	17	7	41.1765
hfeng-pmm1	SNP	ti	map_l125_m2_e0	homalt	99.8195	99.7887	99.8502	68.6124	11334	24	11334	17	7	41.1765
hfeng-pmm1	SNP	ti	map_l125_m2_e1	homalt	99.8210	99.7905	99.8515	68.6411	11434	24	11434	17	7	41.1765
hfeng-pmm1	SNP	ti	map_l150_m0_e0	homalt	99.6199	99.6740	99.5658	75.8370	2752	9	2752	12	4	33.3333
hfeng-pmm1	SNP	ti	map_l150_m1_e0	homalt	99.7748	99.7543	99.7952	71.0227	7309	18	7309	15	6	40.0000
hfeng-pmm1	SNP	ti	map_l150_m2_e0	homalt	99.7833	99.7637	99.8030	73.2106	7598	18	7598	15	6	40.0000
hfeng-pmm1	SNP	ti	map_l150_m2_e1	homalt	99.7855	99.7660	99.8049	73.2531	7675	18	7675	15	6	40.0000
hfeng-pmm1	SNP	ti	map_l250_m0_e0	homalt	99.0847	99.3119	98.8584	92.1786	433	3	433	5	2	40.0000
hfeng-pmm1	SNP	ti	map_l250_m1_e0	homalt	99.4712	99.5022	99.4403	86.8852	1599	8	1599	9	2	22.2222
hfeng-pmm1	SNP	ti	map_l250_m2_e0	homalt	99.5141	99.5426	99.4857	87.7793	1741	8	1741	9	2	22.2222
hfeng-pmm1	SNP	ti	map_l250_m2_e1	homalt	99.5205	99.5485	99.4924	87.8161	1764	8	1764	9	2	22.2222
hfeng-pmm1	SNP	ti	map_siren	homalt	99.9011	99.8760	99.9261	52.1075	37869	47	37865	28	18	64.2857
hfeng-pmm1	SNP	ti	segdup	homalt	99.9467	99.9600	99.9334	88.2045	7502	3	7502	5	5	100.0000
hfeng-pmm1	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	42.2535	41	0	41	0	0
hfeng-pmm1	SNP	tv	*	homalt	99.9869	99.9841	99.9897	20.7747	377063	60	377056	39	21	53.8462
hfeng-pmm1	SNP	tv	HG002complexvar	homalt	99.9763	99.9664	99.9863	22.9407	95079	32	95072	13	11	84.6154
hfeng-pmm1	SNP	tv	HG002compoundhet	homalt	99.8229	99.7934	99.8523	42.7460	3381	7	3381	5	5	100.0000
hfeng-pmm1	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	func_cds	homalt	100.0000	100.0000	100.0000	25.9774	1704	0	1704	0	0
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6176	99.4275	99.8084	67.3342	521	3	521	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9059	99.8514	99.9603	61.6429	10082	15	10082	4	4	100.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8339	99.7418	99.9261	75.6588	5409	14	5409	4	2	50.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	53.3915	481	0	481	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	62.7135	786	0	786	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	67.7914	525	0	525	0	0
ghariani-varprowl	SNP	tv	tech_badpromoters	homalt	97.4359	97.4359	97.4359	55.1724	38	1	38	1	0	0.0000
hfeng-pmm1	INDEL	*	*	homalt	99.6836	99.7787	99.5886	55.4406	124895	277	124903	516	501	97.0930
hfeng-pmm1	INDEL	*	HG002complexvar	homalt	99.7782	99.8372	99.7192	55.9241	26983	44	26991	76	70	92.1053

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge