PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84701-84750 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 63.1313 | 73 | 11 | 73 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9149 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.2143 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4742 | 98.9540 | 100.0000 | 75.3389 | 473 | 5 | 473 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4186 | 98.8439 | 100.0000 | 78.2581 | 342 | 4 | 342 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9928 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9820 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3569 | 98.7220 | 100.0000 | 34.9474 | 309 | 4 | 309 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6241 | 99.2509 | 100.0000 | 64.3909 | 265 | 2 | 266 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 48.9796 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 86.9565 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 4.3478 | 22 | 1 | 22 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 90.0000 | 100.0000 | 81.8182 | 94.7368 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.0569 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.8519 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 91.9065 | 42 | 3 | 42 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4224 | 97.3958 | 99.4709 | 88.5938 | 187 | 5 | 188 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.2733 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 91.8919 | 100.0000 | 85.0000 | 94.2029 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 92.6829 | 100.0000 | 86.3636 | 94.4862 | 19 | 0 | 19 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 92.6829 | 100.0000 | 86.3636 | 94.6860 | 19 | 0 | 19 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | het | 98.0997 | 97.1698 | 99.0476 | 92.0814 | 103 | 3 | 104 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 96.7480 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 90.0000 | 100.0000 | 81.8182 | 95.9707 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 90.0000 | 100.0000 | 81.8182 | 96.5839 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 96.4392 | 10 | 0 | 10 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 97.7253 | 24 | 0 | 24 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.8495 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||