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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
85401-85450 / 86044 show all
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
61.6432
97.7532
45.0148
36.4990
274163274533533280
97.8228
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
71.3041
72.8754
69.7991
45.2762
809530131062945993296
71.6678
eyeh-varpipeINDELI1_5*homalt
96.1261
97.6964
94.6055
51.8219
5903613925897833633305
98.2753
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50het
88.8266
96.5799
82.2256
51.6201
152215391610834823306
94.9454
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
62.0279
93.0174
46.5270
38.0827
2944221295433953317
97.7025
egarrison-hhgaINDELD1_5HG002compoundhethet
51.9684
88.9468
36.7077
50.8341
1537191196933953320
97.7909
gduggal-snapvardINDELI6_15HG002compoundhethet
36.3374
54.3269
27.2981
31.6711
11395147039153322
84.8531
gduggal-snapvardINDELI6_15HG002compoundhet*
20.6071
16.5147
27.3957
31.7261
14497325147839173324
84.8609
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
53.1638
65.0431
44.9536
49.5979
1282689329640363328
82.4579
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.1638
65.0431
44.9536
49.5979
1282689329640363328
82.4579
anovak-vgSNPtimap_sirenhet
85.3428
91.0279
80.3260
62.0963
56785559756323137953334
24.1682
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.4845
74.4341
85.2701
46.6287
2821296903258056283335
59.2573
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
41.1509
37.5633
45.4962
49.7904
23743946337940483339
82.4852
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.1509
37.5633
45.4962
49.7904
23743946337940483339
82.4852
gduggal-snapvardINDELD1_5HG002complexvarhet
89.8124
96.1325
84.2721
56.4465
199608032551047613355
70.4684
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.4960
66.6208
30.1322
55.6999
1451727145933833363
99.4088
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.9659
93.6956
94.2379
71.6964
6036940626044736963375
91.3149
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
47.4256
81.8182
33.3900
61.2010
1782396176935293376
95.6645
ndellapenna-hhgaINDELD1_5HG002compoundhet*
69.2944
67.8709
70.7788
60.8775
83043931838834633380
97.6032
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.5783
32.0401
35.2715
61.6614
19494134192935403386
95.6497
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.7692
97.8411
79.5775
59.2240
134602971389935673388
94.9818
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.7692
97.8411
79.5775
59.2240
134602971389935673388
94.9818
eyeh-varpipeINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
51.5543
84.6990
37.0542
41.5748
1871338216136713393
92.4271
egarrison-hhgaINDELD1_5*het
97.6225
99.3251
95.9773
54.9367
869835918741836643399
92.7675
ciseli-customINDELI6_15**
35.4599
24.6948
62.8636
46.3768
613018693609436003400
94.4444
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
60.5878
57.3058
64.2686
55.8452
65814903776343163401
78.7998
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.9809
86.1182
87.8610
55.6334
2704843602713537493406
90.8509
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.9809
86.1182
87.8610
55.6334
2704843602713537493406
90.8509
anovak-vgSNP*map_l100_m1_e0het
80.4155
91.0315
72.0169
72.1565
41291406840830158653407
21.4749
eyeh-varpipeINDELI6_15**
71.2994
63.0343
82.0590
39.8519
1564791761573434403408
99.0698
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
70.9466
66.7041
75.7654
53.5142
1070453431086434753422
98.4748
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
29.0460
26.6974
31.8478
58.4515
16244459161534563422
99.0162
anovak-vgSNP*map_l100_m2_e0het
80.6158
91.0795
72.3085
73.6388
42260413941790160043433
21.4509
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.8320
33.8727
48.3358
55.3849
34126661419744863438
76.6384
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
76.0027
83.0403
70.0649
36.4124
864217651112747543440
72.3601
eyeh-varpipeINDELI1_5HG002compoundhet*
54.5656
48.0495
63.1261
63.8199
59376419596134823440
98.7938
anovak-vgSNP*map_l100_m2_e1het
80.7046
91.1126
72.4307
73.6475
42730416842251160823449
21.4463
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.6876
76.6436
67.3336
60.9234
1120334141208158613450
58.8637
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
49.1300
84.7567
34.5903
59.0099
1846332185335043453
98.5445
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50het
88.6622
97.0558
81.6049
51.6846
152964641599736063454
95.7848
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
62.0445
67.3110
57.5423
47.2192
39351911594743883469
79.0565
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.0445
67.3110
57.5423
47.2192
39351911594743883469
79.0565
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.9598
95.4921
90.5582
61.3692
2910613745945661993476
56.0736
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.9598
95.4921
90.5582
61.3692
2910613745945661993476
56.0736
gduggal-bwavardSNP***
99.3249
99.0431
99.6083
22.9016
3025405292293004827118173477
29.4237
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
55.6919
47.1555
68.0020
66.7689
15086169061797784593479
41.1278
mlin-fermikitSNPtimap_sirenhomalt
85.5625
81.8362
89.6443
44.4398
3102968873102535843486
97.2656
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50*
89.0060
88.0657
89.9667
48.3054
3222543673213735843498
97.6004
mlin-fermikitSNPtimap_siren*
84.2869
75.7361
95.0143
45.5372
76005243507600139883501
87.7884
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
62.8790
57.8527
68.8617
41.8554
79755810793735893504
97.6317