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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
85201-85250 / 86044 show all
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
76.0161
83.1560
70.0052
27.1233
46995534022882284
99.8252
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
52.4343
64.2857
44.2724
31.6918
477265200225202292
90.9524
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.4079
40.5785
44.4101
31.8353
14172075201425212293
90.9560
anovak-vgSNPtimap_l100_m2_e0*
84.5385
88.5991
80.8339
70.4808
43379558243002101962298
22.5383
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.8421
54.7304
76.5939
75.6642
87997278877026802299
85.7836
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.8421
54.7304
76.5939
75.6642
87997278877026802299
85.7836
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
61.8393
51.5519
77.2561
71.5347
82887789826124322302
94.6546
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
61.8393
51.5519
77.2561
71.5347
82887789826124322302
94.6546
gduggal-snapvardSNP*HG002compoundhethet
77.1322
83.8682
71.3978
57.2411
1189022871327053162307
43.3973
anovak-vgSNPtimap_l100_m2_e1*
84.6108
88.6390
80.9329
70.4744
43863562243482102442310
22.5498
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.6766
79.8823
85.6735
55.5568
1411635551411923612322
98.3482
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.6766
79.8823
85.6735
55.5568
1411635551411923612322
98.3482
mlin-fermikitINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
72.4419
70.6939
74.2785
64.5876
71212952702624332324
95.5199
mlin-fermikitSNPtimap_l100_m1_e0homalt
75.0582
68.1626
83.5061
48.1080
1224257181224224182328
96.2779
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
67.4226
63.3961
71.9952
36.3292
59963462604423512331
99.1493
mlin-fermikitSNPtimap_l100_m1_e0*
73.0893
60.7644
91.6861
50.6018
29125188062912526412337
88.4892
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
55.6896
75.0355
44.2746
57.4199
1058352266433532340
69.7882
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
54.2480
71.5164
43.6969
32.3548
349139190324522341
95.4731
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
44.3676
44.4859
44.2500
32.4739
10731339194724532342
95.4749
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
86.1593
93.2312
80.0845
46.3972
5661411966324032342
97.4615
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.1489
40.2731
63.0429
36.1826
23893543484828422348
82.6179
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
48.2780
92.0474
32.7195
37.0781
108894122625212349
93.1773
mlin-fermikitSNPtimap_l100_m2_e0homalt
75.4463
68.6657
83.7129
51.9470
1257257371257224462353
96.1979
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
45.6100
45.3313
45.8922
57.7778
18062178286033722355
69.8399
anovak-vgINDEL*HG002complexvarhet
72.0208
60.7851
88.3522
57.0408
28090181223012939722361
59.4411
mlin-fermikitSNPtimap_l100_m2_e0*
73.5756
61.3876
91.8021
54.4848
30056189053005626842362
88.0030
mlin-fermikitSNPtimap_l100_m2_e1homalt
75.6197
68.8710
83.8347
52.0014
1273757571273724562363
96.2134
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9649
79.7856
88.6063
45.8996
2552564672937337772366
62.6423
ciseli-customINDELI6_15HG002compoundhethomalt
0.8094
32.2581
0.4098
28.2142
10211024302370
97.5309
gduggal-snapfbINDEL*HG002complexvar*
90.4920
87.9994
93.1300
55.3026
6770592336929851122371
46.3811
gduggal-snapvardSNPti**
99.1158
98.9272
99.3052
22.3384
2063143223742054412143732372
16.5032
mlin-fermikitSNPtimap_l100_m2_e1*
73.7873
61.6490
91.8775
54.5530
30507189783050726972372
87.9496
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
61.8858
52.4538
75.4536
73.3552
84337644831827062382
88.0266
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.0557
93.1620
68.6595
75.7645
5981439592627052382
88.0591
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
61.8858
52.4538
75.4536
73.3552
84337644831827062382
88.0266
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.0557
93.1620
68.6595
75.7645
5981439592627052382
88.0591
anovak-vgINDELD1_5*homalt
93.1579
92.5438
93.7802
58.8390
4527836484576130352387
78.6491
mlin-fermikitINDELD6_15**
87.9258
85.7734
90.1891
52.9541
2238037122242124392392
98.0730
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
58.8351
54.0163
64.5980
47.2721
45193847560030692397
78.1036
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.1102
86.0761
92.3660
60.6253
2623642443315227402400
87.5912
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.1102
86.0761
92.3660
60.6253
2623642443315227402400
87.5912
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
53.8464
67.1975
44.9213
37.7402
633309219826952403
89.1651
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
43.0132
41.0316
45.1960
37.9193
15992298222526982406
89.1772
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
65.3933
98.2278
49.0105
39.1883
232842232824222406
99.3394
gduggal-snapvardSNP*HG002compoundhet*
79.9672
80.6669
79.2796
52.8107
2082949922086454532407
44.1408
mlin-fermikitSNP*map_l100_m0_e0homalt
62.9127
56.0069
71.7609
49.3097
65085112650825612415
94.2991
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
88.7284
98.2608
80.8820
41.3226
102261811056424972416
96.7561
mlin-fermikitSNP*map_l100_m0_e0*
59.6148
45.9548
84.8308
53.4081
15092177491508826982419
89.6590
eyeh-varpipeINDELI6_15HG002compoundhet*
36.3679
28.3500
50.7094
30.4777
24886288250224322425
99.7122
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
49.2492
43.6456
56.5037
39.7780
41285330423132572430
74.6085